RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 RNF220Q5VTB9 566 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 ABHD12BQ7Z5M8 362 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-235ENST00000557740 GPAT4Q86UL3 456 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 MUC15Q8N387 334 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 OR9K2Q8NGE7 335 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 SLC38A5Q8WUX1 472 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 TMEM19Q96HH6 336 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 SF3B5Q9BWJ5 86 aaKnown RBP12.85□□□□□ -0.35
SHMT2-235ENST00000557740 FKRPQ9H9S5 495 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 SLC17A5Q9NRA2 495 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 SDR39U1Q9NRG7 319 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-235ENST00000557740 ADPRHL2Q9NX46 363 aa12.85□□□□□ -0.35
SHMT2-235ENST00000557740 A0A096LPI6 279 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 FAM234BA2RU67 622 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 A8MVM7 634 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 FRS3O43559 492 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 CRLF1O75462 422 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 ERLIN1O75477 346 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 KRT33AO76009 404 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 WNT11O96014 354 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 TFPTP0C1Z6 253 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 MPGP29372 298 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 FABP6P51161 128 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 BNIP2Q12982 314 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 C1QTNF12Q5T7M4 302 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 ZNF544Q6NX49 715 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 AAED1Q7RTV5 226 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 MAVSQ7Z434 540 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 MIER2Q8N344 545 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 TMEM99Q8N816 258 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 POMGNT2Q8NAT1 580 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 OR9I1Q8NGQ6 314 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 VPS33AQ96AX1 596 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 OR52B2Q96RD2 323 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 RHNO1Q9BSD3 238 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 RAD21L1Q9H4I0 556 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 PIF1Q9H611 641 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 ZNF232Q9UNY5 417 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 IFT52Q9Y366 437 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 ATP23Q9Y6H3 246 aa12.84□□□□□ -0.35
SHMT2-235ENST00000557740 A0A0G2JPF8 293 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 HNRNPCL2B2RXH8 293 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 HNRNPCL3B7ZW38 293 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 HNRNPCL1O60812 293 aaKnown RBP12.83□□□□□ -0.36
SHMT2-235ENST00000557740 HNRNPCL4P0DMR1 293 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 CDH2P19022 906 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-235ENST00000557740 ACAA2P42765 397 aaKnown RBP12.83□□□□□ -0.36
SHMT2-235ENST00000557740 PRPS1P60891 318 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 STX1BP61266 288 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 IRX1P78414 480 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-235ENST00000557740 C1orf140Q5VVS0 124 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 TMEM225Q6GV28 225 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 C11orf71Q6IPW1 123 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 CLEC2AQ6UVW9 174 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 B3GLCTQ6Y288 498 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 DNM1P46Q6ZS02 220 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 CLIP4Q8N3C7 705 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 WDR31Q8NA23 367 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 ZNF385AQ96PM9 386 aaKnown RBP12.83□□□□□ -0.36
SHMT2-235ENST00000557740 SPATA9Q9BWV2 254 aa12.83□□□□□ -0.36
SHMT2-235ENST00000557740 ATRQ13535 2644 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 C5orf58C9J3I9 102 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 TLX2O43763 284 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-235ENST00000557740 CD5LO43866 347 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 VAMP5O95183 116 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 AHSA1O95433 338 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 BMP4P12644 408 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 PRG2P13727 222 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 GTF2E2P29084 291 aaKnown RBP12.82□□□□□ -0.36
SHMT2-235ENST00000557740 DSCR9P59020 149 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 SLC25A3Q00325 362 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 RAB35Q15286 201 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 RGNQ15493 299 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 ZNF311Q5JNZ3 666 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 PRAMEF8Q5VWM4 474 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 PRAMEF7Q5VXH5 474 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 SERPINA11Q86U17 422 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 ZIC4Q8N9L1 334 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 BBS10Q8TAM1 723 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 C3orf49Q96BT1 292 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 TLCD1Q96CP7 247 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 YAE1D1Q9NRH1 226 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 RPS6KB2Q9UBS0 482 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 USH1CQ9Y6N9 552 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 ABCA1O95477 2261 aa12.82□□□□□ -0.36
SHMT2-235ENST00000557740 IGHV4-30-2A0A087WSY4 118 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 OR6C65A6NJZ3 312 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 TMEM229AB2RXF0 380 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 ZNF587BE7ETH6 402 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 ATP6V1G2-DDX39BF2Z307 99 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 H7C417 338 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 KLF11O14901 512 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 CHRNB3Q05901 458 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 FADDQ13158 208 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 HIKESHIQ53FT3 197 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 SLC2A7Q6PXP3 512 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 GOLGA6L1Q8N7Z2 621 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 STK35Q8TDR2 534 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 HTRA1Q92743 480 aa12.81□□□□□ -0.36
SHMT2-235ENST00000557740 GTF2H4Q92759 462 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms