RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CADP27708 2225 aa11.21□□□□□ -0.62
LINC00643-202ENST00000553426 ZC3H12DA2A288 527 aaKnown RBP11.2□□□□□ -0.62
LINC00643-202ENST00000553426 LIPT2A6NK58 231 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 AQP7P3A6NL99 342 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 C5orf58C9J3I9 102 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 SSX4O60224 188 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 AKR7A3O95154 331 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 CD8AP01732 235 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 THBS1P07996 1170 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 ITGA5P08648 1049 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 TFPTP0C1Z6 253 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 PAX7P23759 505 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 NTF4P34130 210 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 PRPS1P60891 318 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 STX1BP61266 288 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 CHRNB3Q05901 458 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 RAB35Q15286 201 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 SLC9B1Q4ZJI4 515 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 TSPO2Q5TGU0 170 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 RNF220Q5VTB9 566 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 ZNF544Q6NX49 715 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 TMEM99Q8N816 258 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 MAPK1IP1LQ8NDC0 245 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 OR9K2Q8NGE7 335 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 MAELQ96JY0 434 aaKnown RBP11.2□□□□□ -0.62
LINC00643-202ENST00000553426 C1QTNF6Q9BXI9 259 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 CACNG6Q9BXT2 260 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 AMBRA1Q9C0C7 1298 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 SLC7A10Q9NS82 523 aa11.2□□□□□ -0.62
LINC00643-202ENST00000553426 GDF2Q9UK05 429 aaPredicted RBP11.2□□□□□ -0.62
LINC00643-202ENST00000553426 ZNF443Q9Y2A4 671 aaPredicted RBP11.2□□□□□ -0.62
LINC00643-202ENST00000553426 DSPPQ9NZW4 1301 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 OR6C65A6NJZ3 312 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 E7EQL1 145 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 PDLIM1O00151 329 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 TLX2O43763 284 aaPredicted RBP11.19□□□□□ -0.62
LINC00643-202ENST00000553426 CRLF1O75462 422 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 AHSA1O95433 338 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 PTNP21246 168 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 GTF2E2P29084 291 aaKnown RBP11.19□□□□□ -0.62
LINC00643-202ENST00000553426 ACAA2P42765 397 aaKnown RBP11.19□□□□□ -0.62
LINC00643-202ENST00000553426 FADDQ13158 208 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 ZNF311Q5JNZ3 666 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 CLEC2AQ6UVW9 174 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 TMEM19Q96HH6 336 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 KCNS3Q9BQ31 491 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 SPATA9Q9BWV2 254 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 OBP2BQ9NPH6 170 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 SLC17A5Q9NRA2 495 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 SLC6A13Q9NSD5 602 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 TMEM45AQ9NWC5 275 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 RPS6KB2Q9UBS0 482 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 ATP23Q9Y6H3 246 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 PMF1-BGLAPU3KQ54 211 aa11.19□□□□□ -0.62
LINC00643-202ENST00000553426 ZNF587BE7ETH6 402 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 KLF11O14901 512 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 POLR3GO15318 223 aaPredicted RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 NDUFS7O75251 213 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 CDH2P19022 906 aaPredicted RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 APOBEC3AP31941 199 aaPredicted RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 MVDP53602 400 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 FOXG1P55316 489 aaPredicted RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 SPOCK1Q08629 439 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 BNIP2Q12982 314 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 MAPK11Q15759 364 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 RPS26P11Q5JNZ5 115 aaPredicted RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 C1orf140Q5VVS0 124 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 PRAMEF8Q5VWM4 474 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 PRAMEF7Q5VXH5 474 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 CLIP4Q8N3C7 705 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 GOLGA6L1Q8N7Z2 621 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 WDR31Q8NA23 367 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 BBS10Q8TAM1 723 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 STK35Q8TDR2 534 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 NANOS1Q8WY41 292 aaKnown RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 SLC35B4Q969S0 331 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 VPS33AQ96AX1 596 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 AURKBQ96GD4 344 aaPredicted RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 ZNF385AQ96PM9 386 aaKnown RBP11.18□□□□□ -0.62
LINC00643-202ENST00000553426 OR52B2Q96RD2 323 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 TMBIM4Q9HC24 238 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 RASD1Q9Y272 281 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 USH1CQ9Y6N9 552 aa11.18□□□□□ -0.62
LINC00643-202ENST00000553426 CUBNO60494 3623 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 ELOA3DA6NLF2 546 aaPredicted RBP11.17□□□□□ -0.62
LINC00643-202ENST00000553426 CLIC1O00299 241 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 FRS3O43559 492 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 CD5LO43866 347 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 TGDSO95455 350 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 UBE2NP61088 152 aaKnown RBP11.17□□□□□ -0.62
LINC00643-202ENST00000553426 IRX1P78414 480 aaPredicted RBP11.17□□□□□ -0.62
LINC00643-202ENST00000553426 RGNQ15493 299 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 ELOA3BQ3SY89 546 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 GTDC1Q4AE62 458 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 DNM1P46Q6ZS02 220 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 SERPINA11Q86U17 422 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 KRT73Q86Y46 540 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 ZIC4Q8N9L1 334 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 ELOA3Q8NG57 546 aa11.17□□□□□ -0.62
LINC00643-202ENST00000553426 OR9I1Q8NGQ6 314 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms