RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PRPS1P60891 318 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 CSNK2A1P68400 391 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SLC35A1P78382 337 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 MYBPHQ13203 477 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 PDK3Q15120 406 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 POU4F3Q15319 338 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SNCBQ16143 134 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SGCBQ16585 318 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 ST3GAL2Q16842 350 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 TMEM176BQ3YBM2 270 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-211ENST00000552338 ZBED5Q49AG3 693 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 C1QL3Q5VWW1 255 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 ARHGAP11AQ6P4F7 1023 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 PAQR6Q6TCH4 344 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 KLHL17Q6TDP4 642 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 MAMDC2Q7Z304 686 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-211ENST00000552338 PM20D2Q8IYS1 436 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 GHDCQ8N2G8 530 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 TEX19Q8NA77 164 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 LRRC75AQ8NAA5 344 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 AQP11Q8NBQ7 271 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 ZPLD1Q8TCW7 415 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SARAFQ96BY9 339 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 WDYHV1Q96HA8 205 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 TIMP4Q99727 224 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 GRIP2Q9C0E4 1043 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SLC6A15Q9H2J7 730 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 RNF122Q9H9V4 155 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SMURF2Q9HAU4 748 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 NANSQ9NR45 359 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 ALKBH4Q9NXW9 302 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 RPH3AQ9Y2J0 694 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF835Q9Y2P0 537 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 LIPGQ9Y5X9 500 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 MED12LQ86YW9 2145 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 PKD1L2Q7Z442 2459 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 COL6A6A6NMZ7 2263 aa8.6□□□□□ -1.03
LIMA1-211ENST00000552338 SAC3D1A6NKF1 404 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 AHRRA9YTQ3 701 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 MS4A18H0YCH9 400 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 BCKDKO14874 412 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 ARPC3O15145 178 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SLC16A6O15403 523 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SEC14L5O43304 696 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 PIP5K1CO60331 668 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 VAMP5O95183 116 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 RCBTB2O95199 551 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 HOXD4P09016 255 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SHC1P29353 583 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 RPS5P46782 204 aaKnown RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 DIO1P49895 249 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 RPS6KA3P51812 740 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SUCLG1P53597 346 aaKnown RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 RAD23AP54725 363 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 CLDN20P56880 219 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 EFNB1P98172 346 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 CDK5Q00535 292 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 PMP22Q01453 160 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 NPRL3Q12980 569 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 LAPTM4AQ15012 233 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 TAF11Q15544 211 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 MS4A18Q3C1V0 323 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 OTUD3Q5T2D3 398 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 PDSS1Q5T2R2 415 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 C19orf48Q6RUI8 117 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 FAM180AQ6UWF9 173 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF620Q6ZNG0 422 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 Q6ZPB1 254 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 ATG16L2Q8NAA4 619 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 OR5J2Q8NH18 312 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 OR2V1Q8NHB1 315 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 MAGEE2Q8TD90 523 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 CPNE4Q96A23 557 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SNRNP40Q96DI7 357 aaKnown RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 FAM46AQ96IP4 442 aaKnown RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 HRASLS5Q96KN8 279 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 MOGAT1Q96PD6 335 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SF3B5Q9BWJ5 86 aaKnown RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 UCK2Q9BZX2 261 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 OR11A1Q9GZK7 315 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 DEFB127Q9H1M4 99 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 VCXQ9H320 206 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF556Q9HAH1 456 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SLC25A19Q9HC21 320 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 GP6Q9HCN6 339 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 PAPOLBQ9NRJ5 636 aaKnown RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SMPD3Q9NY59 655 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-211ENST00000552338 TAS2R5Q9NYW4 299 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SPRR3Q9UBC9 169 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 SVILO95425 2214 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 ALPK2Q86TB3 2170 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 CACNA1BQ00975 2339 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 DOCK7Q96N67 2140 aa8.59□□□□□ -1.03
LIMA1-211ENST00000552338 A0A1W2PNV4 684 aa8.58□□□□□ -1.04
LIMA1-211ENST00000552338 UNC119BA6NIH7 251 aa8.58□□□□□ -1.04
LIMA1-211ENST00000552338 AQP7P3A6NL99 342 aa8.58□□□□□ -1.04
LIMA1-211ENST00000552338 ZAR1LA6NP61 321 aa8.58□□□□□ -1.04
LIMA1-211ENST00000552338 EFCAB9A8MZ26 197 aa8.58□□□□□ -1.04
LIMA1-211ENST00000552338 H0YAE9 185 aa8.58□□□□□ -1.04
LIMA1-211ENST00000552338 H3BML4 177 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms