RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 A0A0B4J293 547 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 A0A0G2JMP0 313 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 A0A0X1KG70 313 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 BLOC1S5-TXNDC5H3BN57 136 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 EIF4EP06730 217 aaKnown RBP16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 RORAP35398 523 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 AQP2P41181 271 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 CAPZA2P47755 286 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 PRPS1P60891 318 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 HSD11B2P80365 405 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 EGR4Q05215 589 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 ZNF74Q16587 644 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 SLC25A35Q3KQZ1 300 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 CDONQ4KMG0 1287 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 SNAP47Q5SQN1 464 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 ATAD3CQ5T2N8 411 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 TRILQ7L0X0 811 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 GLCCI1Q86VQ1 547 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 TPRA1Q86W33 373 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 SLITRK4Q8IW52 837 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 OR4M2Q8NGB6 313 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 OR1L3Q8NH93 324 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 RNF31Q96EP0 1072 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 LCORQ96JN0 433 aaPredicted RBP16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 OR1F2PQ96R84 312 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 GPX7Q96SL4 187 aaPredicted RBP16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 ADOQ96SZ5 270 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 RTN4RQ9BZR6 473 aa16.92■□□□□ 0.3
PRPF40B-208ENST00000548436 ZNF264O43296 627 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 PNMTP11086 282 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 MAP2K3P46734 347 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ACTA2P62736 377 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ACTG2P63267 376 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 LGALS3BPQ08380 585 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 CDK5R1Q15078 307 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ISXQ2M1V0 245 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 SYS1Q8N2H4 156 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 MS4A15Q8N5U1 240 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 DTX3Q8N9I9 347 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ENKURQ8TC29 256 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ITFG2Q969R8 447 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 KCTD12Q96CX2 325 aaKnown RBP16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ST6GAL2Q96JF0 529 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 Q96M85 177 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 KCNJ15Q99712 375 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 RNF121Q9H920 327 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 NEK6Q9HC98 313 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 EXOSC3Q9NQT5 275 aaKnown RBP16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 CYSLTR2Q9NS75 346 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 ZNF221Q9UK13 617 aa16.91■□□□□ 0.3
PRPF40B-208ENST00000548436 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 TEX13CA0A0J9YWL9 993 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 A0A1W2PPK0 400 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 FRG2CA6NGY1 282 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SOX1O00570 391 aaPredicted RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SERPINI2O75830 405 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 MYF5P13349 255 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 CDKN2AP42771 156 aaKnown RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 GRK6P43250 576 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 GDI2P50395 445 aaKnown RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SIRPAP78324 504 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 LTBQ06643 244 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 LRRC28Q86X40 367 aaPredicted RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SDR16C5Q8N3Y7 309 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 TEX19Q8NA77 164 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 OR6K6Q8NGW6 343 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SNX33Q8WV41 574 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 THAP4Q8WY91 577 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SMIM19Q96E16 107 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 GAL3ST4Q96RP7 486 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 CCNL2Q96S94 520 aaPredicted RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 NUDT9Q9BW91 350 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 NRSN2Q9GZP1 204 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 NCDNQ9UBB6 729 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 HIF3AQ9Y2N7 669 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 CDC14CA4D256 554 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 A8MV72 311 aaPredicted RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 IDH3BO43837 385 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 ICOSLGO75144 302 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 PAHP00439 452 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 KRT8P05787 483 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 FAM157BP0CG42 384 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 FOLR1P15328 257 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 BCKDHBP21953 392 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 ARL4DP49703 201 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 GBX2P52951 348 aaPredicted RBP16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 VWA2Q5GFL6 755 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SLC35D3Q5M8T2 416 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 LEG1Q6P5S2 330 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 C10orf53Q8N6V4 93 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SAMD12Q8N8I0 201 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 LRRC75AQ8NAA5 344 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 OR4M1Q8NGD0 313 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 LIPHQ8WWY8 451 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 MVB12AQ96EY5 273 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 FRMD6Q96NE9 622 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 TTYH2Q9BSA4 534 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 SYNDIG1Q9H7V2 258 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 MMP25Q9NPA2 562 aa16.9■□□□□ 0.3
PRPF40B-208ENST00000548436 NANSQ9NR45 359 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms