RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RBFOX1Q9NWB1 397 aaKnown RBP14.47□□□□□ -0.09
CUX1-211ENST00000546411 NDUFB11Q9NX14 153 aa14.47□□□□□ -0.09
CUX1-211ENST00000546411 PCDHGB2Q9Y5G2 931 aa14.47□□□□□ -0.09
CUX1-211ENST00000546411 RTTNQ86VV8 2226 aa14.47□□□□□ -0.09
CUX1-211ENST00000546411 TRDV1A0A1B0GX56 115 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 TMEM129A0AVI4 362 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 NARSO43776 548 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 CREBL2O60519 120 aaPredicted RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 KCNK2O95069 426 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 HIST1H1CP16403 213 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 PCBP3P57721 371 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 EIF2B1Q14232 305 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 TMEM106AQ96A25 262 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 OR51J1Q9H342 316 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 ELOVL3Q9HB03 270 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 WDR81Q562E7 1941 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 EP300Q09472 2414 aaPredicted RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 EML2O95834 649 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 GFERP55789 205 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 SPOCK1Q08629 439 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 VWA2Q5GFL6 755 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 EEF1A1P5Q5VTE0 462 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 RNF165Q6ZSG1 346 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 PNLDC1Q8NA58 520 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 TP53I13Q8NBR0 393 aaPredicted RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 SCP2D1Q9UJQ7 156 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 GALR3O60755 368 aaPredicted RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 CTNSO60931 367 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 GATBO75879 557 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 PIPP12273 146 aaPredicted RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 CCR6P51684 374 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 SSX1Q16384 188 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 SFTPA2Q8IWL1 248 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 RCBTB1Q8NDN9 531 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 C15orf40Q8WUR7 153 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 TCTN2Q96GX1 697 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 MSANTD3Q96H12 275 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 FAM71F1Q96KD3 344 aaPredicted RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 METTL8Q9H825 291 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 ZMAT3Q9HA38 289 aaKnown RBP14.46□□□□□ -0.09
CUX1-211ENST00000546411 FGF21Q9NSA1 209 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 ASB6Q9NWX5 421 aa14.46□□□□□ -0.09
CUX1-211ENST00000546411 OR2AT4A6NND4 320 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 AMY2AP04746 511 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 EMP2P54851 167 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 PCBP4P57723 403 aaKnown RBP14.46□□□□□ -0.1
CUX1-211ENST00000546411 POU3F1Q03052 451 aaPredicted RBP14.46□□□□□ -0.1
CUX1-211ENST00000546411 FGL2Q14314 439 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 ARHGAP11BQ3KRB8 267 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 HBMQ6B0K9 141 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 ZNF584Q8IVC4 421 aa14.46□□□□□ -0.1
CUX1-211ENST00000546411 EXO1Q9UQ84 846 aaKnown RBP14.46□□□□□ -0.1
CUX1-211ENST00000546411 YBX2Q9Y2T7 364 aaKnown RBP14.46□□□□□ -0.1
CUX1-211ENST00000546411 CHP2O43745 196 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SSX4O60224 188 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 ZNF432O94892 652 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 CSTBP04080 98 aaKnown RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 AKR1D1P51857 326 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 OR1D5P58170 312 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 RAB11BQ15907 218 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SLC6A19Q695T7 634 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 LRRN1Q6UXK5 716 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 BAHD1Q8TBE0 780 aaPredicted RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 HYLS1Q96M11 299 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 OR5B2Q96R09 309 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 CHMP1AQ9HD42 196 aaPredicted RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 C20orf141Q9NUB4 165 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SLC6A5Q9Y345 797 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SPEF1Q9Y4P9 236 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 A3GALT2U3KPV4 340 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 CASP8AP2Q9UKL3 1982 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SOD1P00441 154 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 ELK1P19419 428 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 COL9A1P20849 921 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 MELKQ14680 651 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 NKAPLQ5M9Q1 402 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 OR4Q3Q8NH05 313 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 ADAMTS18Q8TE60 1221 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 LMF2Q9BU23 707 aaKnown RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 INIPQ9NRY2 104 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 ACOXLQ9NUZ1 547 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 ING1Q9UK53 422 aaPredicted RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 ATF4P18848 351 aaPredicted RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 CD1CP29017 333 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 KIAA1024LP59773 190 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SMCO1Q147U7 214 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 SLC22A10Q63ZE4 541 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 MARCH3Q86UD3 253 aa14.45□□□□□ -0.1
CUX1-211ENST00000546411 C19orf25Q9UFG5 118 aaPredicted RBP14.45□□□□□ -0.1
CUX1-211ENST00000546411 ZSCAN5BA6NJL1 495 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 HCRTR1O43613 425 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 HNRNPFP52597 415 aaKnown RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 DEFA5Q01523 94 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 CCDC58Q4VC31 144 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 VN1R4Q7Z5H5 301 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 LSRQ86X29 649 aaPredicted RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 OR4C15Q8NGM1 316 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 OR52N1Q8NH53 320 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 C16orf52Q8NHV5 167 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 PCDHGA3Q9Y5H0 932 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms