RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ZNF446Q9NWS9 450 aa11.14□□□□□ -0.63
USP28-212ENST00000544750 CRNNQ9UBG3 495 aaPredicted RBP11.14□□□□□ -0.63
USP28-212ENST00000544750 UPB1Q9UBR1 384 aa11.14□□□□□ -0.63
USP28-212ENST00000544750 METRNQ9UJH8 293 aa11.14□□□□□ -0.63
USP28-212ENST00000544750 TRAPPC4Q9Y296 219 aa11.14□□□□□ -0.63
USP28-212ENST00000544750 SLC9A8Q9Y2E8 581 aa11.14□□□□□ -0.63
USP28-212ENST00000544750 SPIN1Q9Y657 262 aaPredicted RBP11.14□□□□□ -0.63
USP28-212ENST00000544750 WNK2Q9Y3S1 2297 aa11.14□□□□□ -0.63
USP28-212ENST00000544750 HMGB1P1B2RPK0 211 aaPredicted RBP11.13□□□□□ -0.63
USP28-212ENST00000544750 SCN2BO60939 215 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 CYP7B1O75881 506 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 C6orf47O95873 294 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 OR4A8P0C604 315 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 UBTFL6P0CB48 400 aaPredicted RBP11.13□□□□□ -0.63
USP28-212ENST00000544750 IMPDH2P12268 514 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 FKBP2P26885 142 aaKnown RBP11.13□□□□□ -0.63
USP28-212ENST00000544750 APEX1P27695 318 aaKnown RBP11.13□□□□□ -0.63
USP28-212ENST00000544750 EPHA3P29320 983 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 GPR68Q15743 365 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 ARHGAP11BQ3KRB8 267 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 HIKESHIQ53FT3 197 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 GRINAQ7Z429 371 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 ZNF786Q8N393 782 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 TEX37Q96LM6 180 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 SLC38A2Q96QD8 506 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 DOK1Q99704 481 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 DUSP26Q9BV47 211 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 KATNB1Q9BVA0 655 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 ZNF350Q9GZX5 532 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 RAB1BQ9H0U4 201 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 SLCO1B3Q9NPD5 702 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 OBP2BQ9NPH6 170 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 TMEM181Q9P2C4 612 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 MKLN1Q9UL63 735 aa11.13□□□□□ -0.63
USP28-212ENST00000544750 TMEM129A0AVI4 362 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 STX11O75558 287 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 AK1P00568 194 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 GUSBP08236 651 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 DAOP14920 347 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 OR2B6P58173 313 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 RPS26P62854 115 aaKnown RBP11.12□□□□□ -0.63
USP28-212ENST00000544750 HBA1P69905 142 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 NAAAQ02083 359 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 TRIP10Q15642 601 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 C3orf36Q3SXR2 165 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 SLC9B1Q4ZJI4 515 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 OR4F3Q6IEY1 312 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 ANKRD16Q6P6B7 361 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 RINLQ6ZS11 566 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 EIF3MQ7L2H7 374 aaKnown RBP11.12□□□□□ -0.63
USP28-212ENST00000544750 SPATA19Q7Z5L4 167 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 CLECL1Q8IZS7 167 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 ZCCHC24Q8N2G6 241 aaKnown RBP11.12□□□□□ -0.63
USP28-212ENST00000544750 OR8J2Q8NGG1 315 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 OR5AK3PQ8NH89 298 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 NEU4Q8WWR8 484 aaPredicted RBP11.12□□□□□ -0.63
USP28-212ENST00000544750 TESCQ96BS2 214 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 MOAP1Q96BY2 351 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 C7orf26Q96N11 449 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 SNX18Q96RF0 628 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 OCEL1Q9H607 264 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 ATAD3AQ9NVI7 634 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 AIG1Q9NVV5 245 aa11.12□□□□□ -0.63
USP28-212ENST00000544750 TRPC5OSA6NMA1 111 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 EIF1BO60739 113 aaKnown RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 IGLV1-44P01699 117 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 CECR9P0C854 216 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 DDX5P17844 614 aaKnown RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 IL12AP29459 219 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 CALCRP30988 508 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 KHKP50053 298 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 UFM1P61960 85 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 SLC35A1P78382 337 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 HGFACQ04756 655 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 PGS1Q32NB8 556 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 LSM12Q3MHD2 195 aaKnown RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 TBRG1Q3YBR2 411 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 SPANXN4Q5MJ08 99 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 TYW3Q6IPR3 259 aaKnown RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 KLHL24Q6TFL4 600 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 NATD1Q8N6N6 113 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 NUP37Q8NFH4 326 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 OR1K1Q8NGR3 316 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 FAM216AQ8WUB2 273 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 OIT3Q8WWZ8 545 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 ZG16BQ96DA0 208 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 ZNF385AQ96PM9 386 aaKnown RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 OR52B2Q96RD2 323 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 PRPF18Q99633 342 aaKnown RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 DPY30Q9C005 99 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 SAP130Q9H0E3 1048 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 NELFAQ9H3P2 528 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 METTL17Q9H7H0 456 aaPredicted RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 ZNF442Q9H7R0 627 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 SEC61A2Q9H9S3 476 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 FBXO9Q9UK97 447 aaPredicted RBP11.11□□□□□ -0.63
USP28-212ENST00000544750 SLC35A3Q9Y2D2 325 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 GPR45Q9Y5Y3 372 aa11.11□□□□□ -0.63
USP28-212ENST00000544750 ARPC4-TTLL3A0A0A6YYG9 625 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 TMEM72A0PK05 275 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms