RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PIK3IP1Q96FE7 263 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 ZC3HAV1LQ96H79 300 aaKnown RBP12.54□□□□□ -0.4
USP28-209ENST00000540925 ALPK1Q96QP1 1244 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 ARHGDIGQ99819 225 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 NAA11Q9BSU3 229 aaPredicted RBP12.54□□□□□ -0.4
USP28-209ENST00000540925 SF3B5Q9BWJ5 86 aaKnown RBP12.54□□□□□ -0.4
USP28-209ENST00000540925 PRR14Q9BWN1 585 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 TRIM2Q9C040 744 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 NOSIPQ9Y314 301 aaKnown RBP12.54□□□□□ -0.4
USP28-209ENST00000540925 MED13LQ71F56 2210 aa12.54□□□□□ -0.4
USP28-209ENST00000540925 A0A0B4J2E0 115 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 A0A1B0GX12 115 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 MRASO14807 208 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 FMO6PO60774 539 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 AKR7A3O95154 331 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 DNASE1P24855 282 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 ART1P52961 327 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 CYLC2Q14093 348 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 MAPRE2Q15555 327 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 TAB1Q15750 504 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 NPTX1Q15818 432 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 VMACQ2NL98 169 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 RABL3Q5HYI8 236 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 OTUD3Q5T2D3 398 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 FBXW9Q5XUX1 488 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 FBXW10Q5XX13 1052 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 BHLHA15Q7RTS1 189 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 SNX32Q86XE0 403 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 ZNF433Q8N7K0 673 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 OR9K2Q8NGE7 335 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 MFSD8Q8NHS3 518 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 DNAJA4Q8WW22 397 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 HSD17B8Q92506 261 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 KISS1RQ969F8 398 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 SLC38A4Q969I6 547 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 TAMM41Q96BW9 452 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 KTI12Q96EK9 354 aaPredicted RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 USB1Q9BQ65 265 aaKnown RBP12.53□□□□□ -0.4
USP28-209ENST00000540925 SLC9A8Q9Y2E8 581 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 NAV3Q8IVL0 2385 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 DNHD1Q96M86 4753 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 ROS1P08922 2347 aa12.53□□□□□ -0.4
USP28-209ENST00000540925 A0A087WUJ7 227 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 M0QX08 132 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 LYZL6O75951 148 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 LYPD3O95274 346 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 PNMTP11086 282 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 RGS8P57771 180 aaPredicted RBP12.52□□□□□ -0.41
USP28-209ENST00000540925 SWT1Q5T5J6 900 aaKnown RBP12.52□□□□□ -0.41
USP28-209ENST00000540925 ULK3Q6PHR2 472 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 C5orf46Q6UWT4 87 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 LINC00114Q6XXX2 140 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 PATL1Q86TB9 770 aaKnown RBP12.52□□□□□ -0.41
USP28-209ENST00000540925 TSPYL5Q86VY4 417 aaPredicted RBP12.52□□□□□ -0.41
USP28-209ENST00000540925 ZNF100Q8IYN0 542 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 SMYD1Q8NB12 490 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 OR52E4Q8NGH9 312 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 OR4D11Q8NGI4 311 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 TAAR8Q969N4 342 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 APH1AQ96BI3 265 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 ZNF583Q96ND8 569 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 ZNF385AQ96PM9 386 aaKnown RBP12.52□□□□□ -0.41
USP28-209ENST00000540925 SH3GL1Q99961 368 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 AMBRA1Q9C0C7 1298 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 PCDHAC1Q9H158 963 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 ARMCX1Q9P291 453 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 EDARQ9UNE0 448 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 CAPN7Q9Y6W3 813 aa12.52□□□□□ -0.41
USP28-209ENST00000540925 LOC100653049A0A140TA62 436 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 ELOA3DA6NLF2 546 aaPredicted RBP12.51□□□□□ -0.41
USP28-209ENST00000540925 MRPL33O75394 65 aaKnown RBP12.51□□□□□ -0.41
USP28-209ENST00000540925 KRT34O76011 436 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 VAMP5O95183 116 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 IGHV3-9P01782 118 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 OPN1SWP03999 348 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 THY1P04216 161 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 ITGA5P08648 1049 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 IL32P24001 234 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 NR1H2P55055 460 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 CDH12P55289 794 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 FOXG1P55316 489 aaPredicted RBP12.51□□□□□ -0.41
USP28-209ENST00000540925 VEZF1Q14119 521 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 OR1Q1Q15612 314 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 DEFB113Q30KQ7 82 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 ELOA3BQ3SY89 546 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 ALG10BQ5I7T1 473 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 TIMM23BQ5SRD1 257 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 C8orf82Q6P1X6 216 aaPredicted RBP12.51□□□□□ -0.41
USP28-209ENST00000540925 P2RY8Q86VZ1 359 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 KRTAP1-3Q8IUG1 177 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 EPHX4Q8IUS5 362 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 ELOA3Q8NG57 546 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 OR6T1Q8NGN1 323 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 OR6S1Q8NH40 331 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 PLPPR2Q96GM1 343 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 BOD1Q96IK1 185 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 TAPBPLQ9BX59 468 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 PARPBPQ9NWS1 579 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 ADPRHL2Q9NX46 363 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms