RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 OR7A17O14581 309 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 GYPBP06028 91 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 PPT1P50897 306 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 MFGE8Q08431 387 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-209ENST00000537178 SLC10A1Q14973 349 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 SLC9A3R2Q15599 337 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 SLX4IPQ5VYV7 408 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 PGAP1Q75T13 922 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 DUSP19Q8WTR2 217 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 NAT6Q93015 286 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 HHIPL1Q96JK4 782 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 PATZ1Q9HBE1 687 aaKnown RBP9.93□□□□□ -0.82
CLIP1-209ENST00000537178 GNG12Q9UBI6 72 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 BOKQ9UMX3 212 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-209ENST00000537178 MED16Q9Y2X0 877 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 RLFQ13129 1914 aa9.93□□□□□ -0.82
CLIP1-209ENST00000537178 MEIS3P2A8K0S8 358 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ZNF891A8MT65 544 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 KRBOX1C9JBD0 128 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 FADS1O60427 444 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 MRPL33O75394 65 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 GPR75O95800 540 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 PPP3CBP16298 524 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 EIF2DP41214 584 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TNFRSF4P43489 277 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 GABRA2P47869 451 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 EMX1Q04741 257 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 CHRNEQ04844 493 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ZNF74Q16587 644 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 HSF5Q4G112 596 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 PAPD4Q6PIY7 484 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SH2D5Q6ZV89 423 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 CREB3L2Q70SY1 520 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 NAA40Q86UY6 237 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 WDR5BQ86VZ2 330 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 OR51B6Q9H340 312 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 KCNIP2Q9NS61 270 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 RFXAPO00287 272 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 DDAH2O95865 285 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 EIF4EP06730 217 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 CTSAP10619 480 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 HIST1H1TP22492 207 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 RPS5P46782 204 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 KCNJ10P78508 379 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SORDQ00796 357 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TNK1Q13470 666 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ATPAF1Q5TC12 328 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 C5orf46Q6UWT4 87 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 C15orf39Q6ZRI6 1047 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 GAREM2Q75VX8 874 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TCEAL8Q8IYN2 117 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SLC30A7Q8NEW0 376 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 DMBX1Q8NFW5 382 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 RHOXF1Q8NHV9 184 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ZBED3Q96IU2 234 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 NKX3-1Q99801 234 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ACSS1Q9NUB1 689 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 C1orf123Q9NWV4 160 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 QPCTLQ9NXS2 382 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ANK1P16157 1881 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TRAV27A0A087WT01 109 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 GABRR3A8MPY1 467 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 KDM4EB2RXH2 506 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 DHRS4L1P0CG22 281 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 PSMB1P20618 241 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SERPINF1P36955 418 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ZNF91Q05481 1191 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 GAB1Q13480 694 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 HNRNPA1L2Q32P51 320 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ZNF684Q5T5D7 378 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 VASNQ6EMK4 673 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 Q6ZSR6 202 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 DPPA4Q7L190 304 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 FCRLAQ7L513 359 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SLC16A14Q7RTX9 510 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 DNAJC5GQ8N7S2 189 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 KHSRPQ92945 711 aaKnown RBP eCLIP9.92□□□□□ -0.822e-6■■■■□ 20.7
CLIP1-209ENST00000537178 CPNE4Q96A23 557 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ANKRD9Q96BM1 317 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 OR14J1Q9UGF5 321 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 PCDHGA1Q9Y5H4 931 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 CLDN24A6NM45 220 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SOCS6O14544 535 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SLC43A1O75387 559 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 OLFM2O95897 454 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TACR3P29371 465 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 YIF1BQ5BJH7 314 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ENTPD8Q5MY95 495 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ISG20Q96AZ6 181 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 WDR83Q9BRX9 315 aaKnown RBP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TMEM59Q9BXS4 323 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 ACPTQ9BZG2 426 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 SLC39A9Q9NUM3 307 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 MED17Q9NVC6 651 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 TRAPPC2LQ9UL33 140 aa9.92□□□□□ -0.82
CLIP1-209ENST00000537178 PUS1Q9Y606 427 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLIP1-209ENST00000537178 FAM183AA6NL82 134 aa9.91□□□□□ -0.82
CLIP1-209ENST00000537178 WASH4PA8MWX3 477 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms