RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 MCTS1Q9ULC4 181 aaKnown RBP2.55□□□□□ -2
CHMP4A-208ENST00000534106 CORO1CQ9ULV4 474 aaPredicted RBP2.55□□□□□ -2
CHMP4A-208ENST00000534106 VDAC3Q9Y277 283 aa2.55□□□□□ -2
CHMP4A-208ENST00000534106 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.55□□□□□ -2
CHMP4A-208ENST00000534106 SLC25A15Q9Y619 301 aa2.55□□□□□ -2
CHMP4A-208ENST00000534106 AP4B1Q9Y6B7 739 aa2.55□□□□□ -2
CHMP4A-208ENST00000534106 MAD1L1Q9Y6D9 718 aa2.55□□□□□ -2
CHMP4A-208ENST00000534106 CSMD3Q7Z407 3707 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 HECTD4Q9Y4D8 3996 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 IGHV3OR16-10A0A075B7F0 116 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 A0A0A6YYD5 115 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMEM129A0AVI4 362 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 GOLGA6L10A6NI86 522 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 OR6C70A6NIJ9 312 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 OR5H1A6NKK0 313 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SMIM23A6NLE4 172 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 B4DSR2 109 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 H0YIZ8 118 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 M0QYG6 137 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TO15178 435 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 CCNT2O60583 730 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 CDH16O75309 829 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SKAP2O75563 359 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 PIAS1O75925 651 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SCELO95171 688 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 IGKV1D-16P01601 117 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 MT-ND5P03915 603 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 ALDOAP04075 364 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 KLK1P06870 262 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 YES1P07947 543 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 MSMBP08118 114 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 ADRA2AP08913 450 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 OR4A8P0C604 315 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 FCGR2AP12318 317 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 PORP16435 677 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 PRTN3P24158 256 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 PTAFRP25105 342 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 PSMA4P25789 261 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 PIK3R1P27986 724 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TLX1P31314 330 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 STIP1P31948 543 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 HPDP32754 393 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 PAFAH1B1P43034 410 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 PPICP45877 212 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 RFX3P48380 749 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 VPS41P49754 854 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 HADHBP55084 474 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 UCP3P55916 312 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 AP1S2P56377 157 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 GPX6P59796 221 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 RPS16P62249 146 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 SARNPP82979 210 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 HOXA4Q00056 320 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 IRF8Q02556 426 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 ZP4Q12836 540 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SF3A3Q12874 501 aaKnown RBP eCLIP2.54□□□□□ -29e-7■■■■□ 24.7
CHMP4A-208ENST00000534106 CSTF3Q12996 717 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 BAMBIQ13145 260 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 BIKQ13323 160 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SLC29A2Q14542 456 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 CASP8Q14790 479 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SLC9A3R2Q15599 337 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TSNQ15631 228 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 ADIPOQQ15848 244 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 PRICKLE4Q2TBC4 344 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMEM176BQ3YBM2 270 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMEM35AQ53FP2 167 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TIMM23BQ5SRD1 257 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 AVPI1Q5T686 147 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 CPTPQ5TA50 214 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SFRP4Q6FHJ7 346 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 C8orf74Q6P047 294 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMEM81Q6P7N7 255 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMEM108Q6UXF1 575 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 FCRLAQ7L513 359 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 KRT73Q86Y46 540 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMEM139Q8IV31 216 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SLC44A2Q8IWA5 706 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 KLHL7Q8IXQ5 586 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 UBE2J2Q8N2K1 259 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 ZNF786Q8N393 782 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 RNF152Q8N8N0 203 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 CCDC89Q8N998 374 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 LRRC57Q8N9N7 239 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 GATSQ8NAP1 163 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 ZNF527Q8NB42 609 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 NOA1Q8NC60 698 aaKnown RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 ZNF540Q8NDQ6 660 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 C17orf47Q8NEP4 570 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TTLQ8NG68 377 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 OR7G3Q8NG95 312 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 OR7G1Q8NGA0 311 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 OR52E4Q8NGH9 312 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 HUS1BQ8NHY5 278 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 MRAPQ8TCY5 172 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 RNF138Q8WVD3 245 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 ZNF75CPQ92670 426 aaPredicted RBP2.54□□□□□ -2
CHMP4A-208ENST00000534106 YIPF5Q969M3 257 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 SPSB4Q96A44 273 aa2.54□□□□□ -2
CHMP4A-208ENST00000534106 TMIGD2Q96BF3 282 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms