RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SRP54P61011 504 aaKnown RBP17.66■□□□□ 0.42
VPS28-213ENST00000530983 SRSF5Q13243 272 aaKnown RBP17.66■□□□□ 0.42
VPS28-213ENST00000530983 BAIAP2L2Q6UXY1 529 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 BTN2A1Q7KYR7 527 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 BEST4Q8NFU0 473 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 ELSPBP1Q96BH3 223 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 SIPA1Q96FS4 1042 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 C7orf50Q9BRJ6 194 aaKnown RBP17.66■□□□□ 0.42
VPS28-213ENST00000530983 ANKRD10Q9NXR5 420 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 DTX4Q9Y2E6 619 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 CIB4A0PJX0 185 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 I3L521 148 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 GPR171O14626 319 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 OR10H2O60403 315 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 CD1AP06126 327 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 H2AFB2P0C5Z0 115 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 PSMB10P40306 273 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 RAG2P55895 527 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 RAB38P57729 211 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 PPP1CAP62136 330 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 SNTB2Q13425 540 aaKnown RBP17.66■□□□□ 0.42
VPS28-213ENST00000530983 HSD17B12Q53GQ0 312 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 MANEAQ5SRI9 462 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 CMIPQ8IY22 773 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 ZNF671Q8TAW3 534 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 ZPLD1Q8TCW7 415 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 ORAI1Q96D31 301 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 NMNAT3Q96T66 252 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 GFI1Q99684 422 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 HEXA-AS1Q9H8Q6 139 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 NCDNQ9UBB6 729 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 HRKO00198 91 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 ZNF593O00488 134 aaPredicted RBP17.65■□□□□ 0.42
VPS28-213ENST00000530983 SELENOFO60613 162 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 KLF8O95600 359 aaPredicted RBP17.65■□□□□ 0.42
VPS28-213ENST00000530983 CTSBP07858 339 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 GDNFP39905 211 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 DIO1P49895 249 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 DYRK1AQ13627 763 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 FGFBP1Q14512 234 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 PON3Q15166 354 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 GXYLT1Q4G148 440 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 UBE2NLQ5JXB2 153 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 SLC22A10Q63ZE4 541 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 UNQ9370/PRO34162Q6UXP9 181 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 CMTM4Q8IZR5 234 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 NPEPL1Q8NDH3 523 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 HGDQ93099 445 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 RBCK1Q9BYM8 510 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 C2orf42Q9NWW7 574 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 HRASLS2Q9NWW9 162 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 UCKL1Q9NWZ5 548 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 A0A0J9YY10 115 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 TNFRSF10CO14798 259 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 PIN1P1O15428 100 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 SULT1A3P0DMM9 295 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 SULT1A4P0DMN0 295 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 TAGLNQ01995 201 aaKnown RBP17.65■□□□□ 0.42
VPS28-213ENST00000530983 NDUFAF6Q330K2 333 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 SGTBQ96EQ0 304 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 DDOQ99489 341 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 NOX4Q9NPH5 578 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 MKKSQ9NPJ1 570 aaPredicted RBP17.65■□□□□ 0.42
VPS28-213ENST00000530983 PTTG3PQ9NZH4 202 aa17.65■□□□□ 0.42
VPS28-213ENST00000530983 MEIKINA0A087WXM9 373 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 OR6C68A6NDL8 312 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 RAF1P04049 648 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 TPOP07202 933 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 GUSBP08236 651 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 SRMP19623 302 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 HNRNPA2B1P22626 353 aaKnown RBP17.64■□□□□ 0.41
VPS28-213ENST00000530983 POU4F3Q15319 338 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 ZNHIT3Q15649 155 aaPredicted RBP17.64■□□□□ 0.41
VPS28-213ENST00000530983 TMEM31Q5JXX7 168 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 FAM199XQ6PEV8 388 aaPredicted RBP17.64■□□□□ 0.41
VPS28-213ENST00000530983 LUZP2Q86TE4 346 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 OR9A4Q8NGU2 314 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 RPLP0P6Q8NHW5 317 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 VSTM2LQ96N03 204 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 FBRSQ9HAH7 460 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.64■□□□□ 0.41
VPS28-213ENST00000530983 CPNE7Q9UBL6 633 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 RNF215Q9Y6U7 377 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 IDSB3KWA1 339 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 NPIPB9F8W1W9 429 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 TGFBR3LH3BV60 316 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 FOXS1O43638 330 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 SPI1P17947 270 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 RPL4P36578 427 aaKnown RBP17.64■□□□□ 0.41
VPS28-213ENST00000530983 TFF2Q03403 129 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 ZNF141Q15928 474 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 NPSR1Q6W5P4 371 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 ZNF550Q7Z398 422 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 OR56B4Q8NH76 319 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 POT1Q9NUX5 634 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 RPS6KB2Q9UBS0 482 aa17.64■□□□□ 0.41
VPS28-213ENST00000530983 ZNF879B4DU55 563 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 TYRP1P17643 537 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 CAMK2DQ13557 499 aa17.63■□□□□ 0.41
VPS28-213ENST00000530983 MFSD13AQ14CX5 517 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms