RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 EMC3Q9P0I2 261 aa9.26□□□□□ -0.93
CPSF1-203ENST00000527916 TMEM181Q9P2C4 612 aa9.26□□□□□ -0.93
CPSF1-203ENST00000527916 POU2F3Q9UKI9 436 aa9.26□□□□□ -0.93
CPSF1-203ENST00000527916 USH1CQ9Y6N9 552 aa9.26□□□□□ -0.93
CPSF1-203ENST00000527916 HEATR1Q9H583 2144 aaKnown RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 TMED7-TICAM2A0A0A6YYA0 188 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 A0A0G2JPF8 293 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 SLC35F4A4IF30 521 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 CDHR4A6H8M9 788 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 CFAP73A6NFT4 308 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 ZNF716A6NP11 495 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 HNRNPCL2B2RXH8 293 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 HNRNPCL3B7ZW38 293 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 H7C417 338 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 EIF1BO60739 113 aaKnown RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 HNRNPCL1O60812 293 aaKnown RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 PGM3O95394 542 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 ANP32DO95626 131 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 HNRNPCL4P0DMR1 293 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 COX5AP20674 150 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 EFNA4P52798 201 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 CRISP3P54108 245 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 DSTNP60981 165 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 EPS8Q12929 822 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 STK11Q15831 433 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 TIMM23BQ5SRD1 257 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 MRPL2Q5T653 305 aaKnown RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 C1QTNF12Q5T7M4 302 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 FBXW9Q5XUX1 488 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 C11orf71Q6IPW1 123 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 BHLHA15Q7RTS1 189 aaPredicted RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 MUC15Q8N387 334 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 PNPT1Q8TCS8 783 aaKnown RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 SLC38A5Q8WUX1 472 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 GTF2H4Q92759 462 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 DDIT4LQ96D03 193 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 MSI2Q96DH6 328 aaKnown RBP9.25□□□□□ -0.93
CPSF1-203ENST00000527916 DHRS9Q9BPW9 319 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 TMEM45AQ9NWC5 275 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 PRSS50Q9UI38 385 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 OSGIN1Q9UJX0 560 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 ZNF232Q9UNY5 417 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 MGAT4BQ9UQ53 548 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 TMED7Q9Y3B3 224 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 GMEB1Q9Y692 573 aa9.25□□□□□ -0.93
CPSF1-203ENST00000527916 NDUFS8O00217 210 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 AP3D1O14617 1153 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 BMP2P12643 396 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 APEHP13798 732 aaKnown RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 ETFAP13804 333 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 ITGA2P17301 1181 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 IGHV1-2P23083 117 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 TACR3P29371 465 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 SRP14P37108 136 aaKnown RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 ACAA2P42765 397 aaKnown RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 CRATP43155 626 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 SLC35A1P78382 337 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 CHRNB3Q05901 458 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 FADDQ13158 208 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 GGTLC2Q14390 218 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 LIN52Q52LA3 116 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 RNF220Q5VTB9 566 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PRAMEF8Q5VWM4 474 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PRAMEF7Q5VXH5 474 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 SLC22A25Q6T423 547 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 SEZ6L2Q6UXD5 910 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 TMEM108Q6UXF1 575 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 HMGN2P46Q86SG4 172 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 ZNF100Q8IYN0 542 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 DEPDC4Q8N2C3 294 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PIAS4Q8N2W9 510 aaPredicted RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 C3orf56Q8N813 242 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 OR52P1PQ8NH57 321 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 HTRA1Q92743 480 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 SLC35B4Q969S0 331 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 ATP6V1G3Q96LB4 118 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 NAA11Q9BSU3 229 aaPredicted RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 CCDC28BQ9BUN5 200 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PAIP1Q9H074 479 aaKnown RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 RAD21L1Q9H4I0 556 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PIF1Q9H611 641 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 ARMC7Q9H6L4 198 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 BCL2L10Q9HD36 194 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PARPBPQ9NWS1 579 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 NOSIPQ9Y314 301 aaKnown RBP9.24□□□□□ -0.93
CPSF1-203ENST00000527916 IFT52Q9Y366 437 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PCDHB14Q9Y5E9 798 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 PMF1-BGLAPU3KQ54 211 aa9.24□□□□□ -0.93
CPSF1-203ENST00000527916 A0A096LPI6 279 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 TMEM72A0PK05 275 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 TMEM247A6NEH6 219 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 OR5H1A6NKK0 313 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 E7EQL1 145 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 CLIC1O00299 241 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 POLR3GO15318 223 aaPredicted RBP9.23□□□□□ -0.93
CPSF1-203ENST00000527916 MRPL33O75394 65 aaKnown RBP9.23□□□□□ -0.93
CPSF1-203ENST00000527916 TGFAP01135 160 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 IMPDH2P12268 514 aa9.23□□□□□ -0.93
CPSF1-203ENST00000527916 HOXB9P17482 250 aaPredicted RBP9.23□□□□□ -0.93
CPSF1-203ENST00000527916 GGT1P19440 569 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms