RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TEX37Q96LM6 180 aa12.41□□□□□ -0.42
CPSF1-201ENST00000526271 C7orf26Q96N11 449 aa12.41□□□□□ -0.42
CPSF1-201ENST00000526271 RSPO3Q9BXY4 272 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-201ENST00000526271 SLC35A3Q9Y2D2 325 aa12.41□□□□□ -0.42
CPSF1-201ENST00000526271 CHST2Q9Y4C5 530 aa12.41□□□□□ -0.42
CPSF1-201ENST00000526271 TMEM129A0AVI4 362 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 GPR171O14626 319 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 WIPF1O43516 503 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 LILRA1O75019 489 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 CELA3BP08861 270 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 CSF3P09919 207 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 TACR3P29371 465 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 MPGP29372 298 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 CLK1P49759 484 aaKnown RBP12.4□□□□□ -0.42
CPSF1-201ENST00000526271 PDLIM4P50479 330 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 HGFACQ04756 655 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 TBRG1Q3YBR2 411 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 C16orf62Q7Z3J2 963 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 KIRREL3Q8IZU9 778 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 NATD1Q8N6N6 113 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 OR9K2Q8NGE7 335 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 OR4A15Q8NGL6 344 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 ZNF563Q8TA94 476 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 TUBGCP3Q96CW5 907 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 NEURL3Q96EH8 262 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 PPP1R36Q96LQ0 422 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 ADAM19Q9H013 955 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 PNPOQ9NVS9 261 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 CRNNQ9UBG3 495 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-201ENST00000526271 KCNS2Q9ULS6 477 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 SLC9A8Q9Y2E8 581 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 AMDHD2Q9Y303 409 aa12.4□□□□□ -0.42
CPSF1-201ENST00000526271 LIPT2A6NK58 231 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 DUXAA6NLW8 204 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 ZNF208O43345 1280 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 AKR7A3O95154 331 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 CPSF4O95639 269 aaKnown RBP12.39□□□□□ -0.43
CPSF1-201ENST00000526271 LGI1O95970 557 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 IGLV1-44P01699 117 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 CECR9P0C854 216 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 APEHP13798 732 aaKnown RBP12.39□□□□□ -0.43
CPSF1-201ENST00000526271 ZNF23P17027 643 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 IL12AP29459 219 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 CDKN2CP42773 168 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 MAGEA8P43361 318 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 BNIP2Q12982 314 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 CR1LQ2VPA4 569 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 SPANXN4Q5MJ08 99 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 COX20Q5RI15 118 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 PAQR6Q6TCH4 344 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 EPHX4Q8IUS5 362 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 OR1K1Q8NGR3 316 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 BCL2L2Q92843 193 aaPredicted RBP12.39□□□□□ -0.43
CPSF1-201ENST00000526271 PLK3Q9H4B4 646 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 AKTIPQ9H8T0 292 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 SLCO1B3Q9NPD5 702 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 CA10Q9NS85 328 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 RLIMQ9NVW2 624 aa12.39□□□□□ -0.43
CPSF1-201ENST00000526271 AGAP5A6NIR3 686 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 SLCO1B7G3V0H7 640 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 NDUFS8O00217 210 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 UPK3AO75631 287 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 TGFAP01135 160 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 CDH2P19022 906 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-201ENST00000526271 UQCRC2P22695 453 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 ACAA2P42765 397 aaKnown RBP12.38□□□□□ -0.43
CPSF1-201ENST00000526271 SELENOPP49908 381 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 GYS2P54840 703 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 PRPS1P60891 318 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 SLC35A1P78382 337 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 NAAAQ02083 359 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 CHRNB3Q05901 458 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 EPS8Q12929 822 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 CEACAM7Q14002 265 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 TRIP10Q15642 601 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 OTUD3Q5T2D3 398 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-201ENST00000526271 WDFY1Q8IWB7 410 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 OIT3Q8WWZ8 545 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 ZHX1-C8orf76Q96EF9 292 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 ZNF837Q96EG3 531 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-201ENST00000526271 AURKBQ96GD4 344 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-201ENST00000526271 SLC38A2Q96QD8 506 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 FKRPQ9H9S5 495 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 POLE3Q9NRF9 147 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-201ENST00000526271 SLC6A13Q9NSD5 602 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 UPB1Q9UBR1 384 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 PCDHGB4Q9UN71 923 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 PMF1-BGLAPU3KQ54 211 aa12.38□□□□□ -0.43
CPSF1-201ENST00000526271 PRSS51A0A1B0GVH4 220 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 LOC390937A0A1W2PQ73 354 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 AQP7P3A6NL99 342 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 TMEM229AB2RXF0 380 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 FAAHO00519 579 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 EDF1O60869 148 aaKnown RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 NPIPB7O75200 414 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 STAMBPO95630 424 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 TACSTD2P09758 323 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 ALDOCP09972 364 aaKnown RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 OR4A8P0C604 315 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms