RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 PAHP00439 452 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ARAFP10398 606 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ETS2P15036 469 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 IGHV1-2P23083 117 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 CXCR1P25024 350 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 SLC16A1P53985 500 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 FOXG1P55316 489 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-215ENST00000519474 HOXC5Q00444 222 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 TRAP1Q12931 704 aaKnown RBP8.26□□□□□ -1.09
HDAC3-215ENST00000519474 CEACAM7Q14002 265 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 SQLEQ14534 574 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 SLC17A1Q14916 467 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 TAB1Q15750 504 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ADRM1Q16186 407 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ZSWIM7Q19AV6 140 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 LIN52Q52LA3 116 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 BEX5Q5H9J7 111 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 NCMAPQ5T1S8 102 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 RNF220Q5VTB9 566 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ABLIM2Q6H8Q1 611 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 WBP2NLQ6ICG8 309 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 PLBD1Q6P4A8 553 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 C16orf54Q6UWD8 224 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 BHLHA15Q7RTS1 189 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-215ENST00000519474 SERPINA11Q86U17 422 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 KRTAP1-3Q8IUG1 177 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ZNF100Q8IYN0 542 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ZNF433Q8N7K0 673 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-215ENST00000519474 TMEM99Q8N816 258 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ZIC4Q8N9L1 334 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 IGFBPL1Q8WX77 278 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 HSD17B8Q92506 261 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 DDIT4LQ96D03 193 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 RBM14Q96PK6 669 aaKnown RBP8.26□□□□□ -1.09
HDAC3-215ENST00000519474 PIP5K1AQ99755 562 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 TMEM204Q9BSN7 226 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 PRR14Q9BWN1 585 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 IKZF5Q9H5V7 419 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 ZNF385DQ9H6B1 395 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 BEX4Q9NWD9 120 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-215ENST00000519474 DCTN4Q9UJW0 460 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 TMEM247A6NEH6 219 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 DPRXA6NFQ7 191 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 LIPT2A6NK58 231 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 GPR171O14626 319 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 FRS3O43559 492 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 EIF1BO60739 113 aaKnown RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 NPIPB7O75200 414 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 LYZL6O75951 148 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 CNOT4O95628 575 aaKnown RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 BAG2O95816 211 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 VIMP08670 466 aaKnown RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 PPIBP23284 216 aaKnown RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 SLC35A1P78382 337 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 NKX6-1P78426 367 aaPredicted RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 CDK6Q00534 326 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 METTL21CQ5VZV1 264 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 FBXW9Q5XUX1 488 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 REEP3Q6NUK4 255 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 CFAP161Q6P656 301 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 SEZ6L2Q6UXD5 910 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 ATG4DQ86TL0 474 aaPredicted RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 RETREG3Q86VR2 466 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 COMTD1Q86VU5 262 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 CADM2Q8N3J6 435 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 DPP10Q8N608 796 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 WFDC11Q8NEX6 87 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 NFKBIDQ8NI38 313 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 BBS10Q8TAM1 723 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 PIGXQ8TBF5 258 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 TSPEARQ8WU66 669 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 PIGTQ969N2 578 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 C3orf49Q96BT1 292 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 ZHX1-C8orf76Q96EF9 292 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 MUS81Q96NY9 551 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 USB1Q9BQ65 265 aaKnown RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 WFDC6Q9BQY6 131 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 NAA11Q9BSU3 229 aaPredicted RBP8.25□□□□□ -1.09
HDAC3-215ENST00000519474 TMEM38AQ9H6F2 299 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 ARMC7Q9H6L4 198 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 UBTD1Q9HAC8 227 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 DLL4Q9NR61 685 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 PPP1R14DQ9NXH3 145 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 NDUFAF1Q9Y375 327 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 FLVCR1Q9Y5Y0 555 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 CCDC168Q8NDH2 2452 aa8.25□□□□□ -1.09
HDAC3-215ENST00000519474 F8P00451 2351 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 A8MVM7 634 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 EVPLLA8MZ36 301 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 TPST2O60704 377 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 MRPL33O75394 65 aaKnown RBP8.24□□□□□ -1.09
HDAC3-215ENST00000519474 MFN2O95140 757 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 AKR7A3O95154 331 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 IGHV3-9P01782 118 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 COX5AP20674 150 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 IL32P24001 234 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 ADSLP30566 484 aaPredicted RBP8.24□□□□□ -1.09
HDAC3-215ENST00000519474 PRKAR1BP31321 381 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 CENPAP49450 140 aa8.24□□□□□ -1.09
HDAC3-215ENST00000519474 P2RY4P51582 365 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms