RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CCDC107Q8WV48 283 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 XAGE5Q8WWM1 108 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 TM4SF19Q96DZ7 209 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 MVB12AQ96EY5 273 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 TRNT1Q96Q11 434 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 TAAR6Q96RI8 345 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 PKP2Q99959 881 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 VPS25Q9BRG1 176 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 C7orf50Q9BRJ6 194 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 ITPAQ9BY32 194 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 TXLNGYQ9BZA5 131 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 NXF5Q9H1B4 397 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 MMP28Q9H239 520 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 PPT2Q9UMR5 302 aa7.23□□□□□ -1.25
LIMCH1-219ENST00000514096 BLACEA4D250 179 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 OR5H15A6NDH6 313 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 FAM90A27PA6NNH2 459 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ACOX3O15254 700 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 RGS14O43566 566 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CTNSO60931 367 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 KCNK2O95069 426 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 BPGMP07738 259 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 G6PDP11413 515 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PLA2G2AP14555 144 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 GDF1P27539 372 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CD40LGP29965 261 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 TNFRSF17Q02223 184 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PLCXD2Q0VAA5 305 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC36A3Q495N2 470 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SLX4IPQ5VYV7 408 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC30A6Q6NXT4 461 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 DHRS4L2Q6PKH6 230 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF621Q6ZSS3 439 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CLECL1Q8IZS7 167 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 VWA5B2Q8N398 1253 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CPEB3Q8NE35 698 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 OR10H5Q8NGA6 315 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PTPMT1Q8WUK0 201 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PSMF1Q92530 271 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 RFKQ969G6 155 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 TMBIM1Q969X1 311 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CNRIP1Q96F85 164 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 AURKBQ96GD4 344 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 C16orf58Q96GQ5 468 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 LRFN5Q96NI6 719 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 NPAS1Q99742 590 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF251Q9BRH9 671 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 MED18Q9BUE0 208 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC22A4Q9H015 551 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 EML4Q9HC35 981 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SERHLQ9NQF3 203 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ZCCHC3Q9NUD5 404 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 H2AFY2Q9P0M6 372 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SEMA5BQ9P283 1151 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ABCD2Q9UBJ2 740 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PHF11Q9UIL8 331 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ENPP5Q9UJA9 477 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SSR3Q9UNL2 185 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 A0A1B0GTH9 108 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 BTBD17A6NE02 478 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CCL21O00585 134 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 DENRO43583 198 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CIDEAO60543 219 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 EIF1BO60739 113 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 TGM6O95932 706 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 BMP4P12644 408 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SSTR2P30874 369 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 NTSP30990 170 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 GABRA3P34903 492 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 EIF1P41567 113 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 MAGEA5P43359 124 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 GSK3AP49840 483 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 MEOX1P50221 254 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SPCS3P61009 180 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 FOXK1P85037 733 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 KRR1Q13601 381 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF273Q14593 569 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SPANXN2Q5MJ10 180 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SAPCD1Q5SSQ6 148 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 OTUD3Q5T2D3 398 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CES4AQ5XG92 561 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 PLBD1Q6P4A8 553 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 RTL4Q6ZR62 310 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CCDC71Q8IV32 467 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 OR52N2Q8NGI0 321 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 OR5D16Q8NGK9 328 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 MZB1Q8WU39 189 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 FBXO17Q96EF6 278 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC19A3Q9BZV2 496 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 TUBB1Q9H4B7 451 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC9A8Q9Y2E8 581 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 DCHS2Q6V1P9 2916 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 LOC100506127A0A0U1RQW1 187 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 MEIOCA2RUB1 952 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 CYR61O00622 381 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 STX16O14662 325 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 HPP00738 406 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 NUDT17P0C025 328 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 RAB40ALP0C0E4 278 aa7.22□□□□□ -1.25
LIMCH1-219ENST00000514096 IL12BP29460 328 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms