RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CHMP2AO43633 222 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KIAA0513O60268 411 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 BCAS1O75363 584 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 CSO75390 466 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SPAG6O75602 509 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CTAG2O75638 210 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CCNKO75909 580 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CABYRO75952 493 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CCNB2O95067 398 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 RAB3DO95716 219 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KRT8P05787 483 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PGK2P07205 417 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ANXA5P08758 320 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 STSP08842 583 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OCM2P0CE71 109 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OCMP0CE72 109 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 RALBP11234 206 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 MLNP12872 115 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 NCF2P19878 526 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 RAB3AP20336 220 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CYP2B6P20813 491 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CPN2P22792 545 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CCND3P30281 292 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 YWHABP31946 246 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 GTF2H1P32780 548 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CDH5P33151 784 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SERPINB5P36952 375 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 FRKP42685 505 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SYKP43405 635 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CASP4P49662 377 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SERPINB9P50453 376 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CDK9P50750 372 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 CASP9P55211 416 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 LIPEQ05469 1076 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ZNF33AQ06730 810 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CDH17Q12864 832 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 STX5Q13190 355 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 GPM6BQ13491 265 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ART3Q13508 389 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 DGCR6Q14129 220 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 FLOT2Q14254 428 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KARSQ15046 597 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 FAM83EQ2M2I3 478 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 TWISTNBQ3B726 338 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 NKAIN1Q4KMZ8 207 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 EPC2Q52LR7 807 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KLHL12Q53G59 568 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SPATA46Q5T0L3 261 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 BEND3Q5T5X7 828 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 WDR25Q64LD2 544 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 CYB5R2Q6BCY4 276 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 TTC33Q6PID6 262 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SIGLEC15Q6ZMC9 328 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 DCXRQ7Z4W1 244 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 HORMAD1Q86X24 394 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 UNC5CLQ8IV45 518 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KLHL7Q8IXQ5 586 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SFRP1Q8N474 314 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SNX31Q8N9S9 440 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SPATA4Q8NEY3 305 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OR8J2Q8NGG1 315 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OR13C2Q8NGS9 318 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PSMA8Q8TAA3 256 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 RNASE8Q8TDE3 154 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 TCP10LQ8TDR4 215 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ST7LQ8TDW4 575 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 GIPC3Q8TF64 312 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 UBLCP1Q8WVY7 318 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 DNAJC9Q8WXX5 260 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OR1E3Q8WZA6 343 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PRCCQ92733 491 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 BORCS5Q969J3 196 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CPNE4Q96A23 557 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 NTAN1Q96AB6 310 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 OTUB2Q96DC9 234 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ELMO2Q96JJ3 720 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 C9orf72Q96LT7 481 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CSPG4P5Q96PW8 444 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PRAM1Q96QH2 718 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 XPO6Q96QU8 1125 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 RASL10BQ96S79 203 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ZNF559Q9BR84 538 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ATG101Q9BSB4 218 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CNPY3Q9BT09 278 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 EDEM2Q9BV94 578 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ZNF717Q9BY31 904 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SLC19A3Q9BZV2 496 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 DERL2Q9GZP9 239 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 RACGAP1Q9H0H5 632 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 HSD3B7Q9H2F3 369 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 C11orf49Q9H6J7 331 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 EXO5Q9H790 373 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 TDRD3Q9H7E2 651 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SRD5A3Q9H8P0 318 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 LRRC40Q9H9A6 602 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 RNPEPL1Q9HAU8 725 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PNPLA3Q9NST1 481 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 DNAJC11Q9NVH1 559 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 CMTM6Q9NX76 183 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ELOVL2Q9NXB9 296 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms