RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ANOS1P23352 680 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 ADORA2BP29275 332 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 PRDX3P30048 256 aaKnown RBP3.74□□□□□ -1.81
VPS13A-212ENST00000493341 CALCRP30988 508 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 RPL29P47914 159 aaKnown RBP3.74□□□□□ -1.81
VPS13A-212ENST00000493341 BIDP55957 195 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 DAOAP59103 153 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 OR5I1Q13606 314 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 ITIH4Q14624 930 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 NKAIN1Q4KMZ8 207 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 CARD16Q5EG05 197 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 C9orf135Q5VTT2 229 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 SLC16A14Q7RTX9 510 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 LRRC49Q8IUZ0 686 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 MMAAQ8IVH4 418 aaKnown RBP3.74□□□□□ -1.81
VPS13A-212ENST00000493341 C4orf32Q8N8J7 132 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF248Q8NDW4 579 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 OR8K3Q8NH51 312 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 OR56B4Q8NH76 319 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 OXGR1Q96P68 337 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 KCNA7Q96RP8 456 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 MCHR1Q99705 422 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 LITAFQ99732 161 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 P2RY13Q9BPV8 354 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 RIOK1Q9BRS2 568 aaKnown RBP3.74□□□□□ -1.81
VPS13A-212ENST00000493341 FBXO44Q9H4M3 255 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 AGPAT3Q9NRZ7 376 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 RPL36Q9Y3U8 105 aaKnown RBP3.74□□□□□ -1.81
VPS13A-212ENST00000493341 WDR97A6NE52 1622 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 FRMPD3Q5JV73 1810 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 CNTNAP2Q9UHC6 1331 aa3.74□□□□□ -1.81
VPS13A-212ENST00000493341 OR5B21A6NL26 309 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 C1orf105O95561 183 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 MYL2P10916 166 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 SELENBP1Q13228 472 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 SOHLH1Q5JUK2 328 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 REEP3Q6NUK4 255 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF836Q6ZNA1 936 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 VRK2Q86Y07 508 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 DRAXINQ8NBI3 349 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ZPLD1Q8TCW7 415 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 GPR151Q8TDV0 419 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 STMN2Q93045 179 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 CCDC126Q96EE4 140 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 CERS2Q96G23 380 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 SLC29A1Q99808 456 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 OPN3Q9H1Y3 402 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF696Q9H7X3 374 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 MRPS30Q9NP92 439 aaKnown RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 IMPAD1Q9NX62 359 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 B3GNT2Q9NY97 397 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ARMCX1Q9P291 453 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 MUTYHQ9UIF7 546 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 STAP1Q9ULZ2 295 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 USP47Q96K76 1375 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 IGHV3-16A0A0C4DH30 117 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 E9PAM4 449 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF701M0R085 212 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 GOSR2O14653 212 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 TRDMT1O14717 391 aaKnown RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 BCKDKO14874 412 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF432O94892 652 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 SLC2A10O95528 541 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 HOXD4P09016 255 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 RBMY1CP0DJD4 496 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 PTNP21246 168 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 UGT1A4P22310 534 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 STOMP27105 288 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 DCKP27707 260 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 CD151P48509 253 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 ERVK11-1P61568 191 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 LY6DQ14210 128 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 OR2G6Q5TZ20 316 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 LEMD1Q68G75 181 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 OR52W1Q6IF63 320 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 SVOPLQ8N434 492 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 SPERTQ8NA61 448 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 TFB1MQ8WVM0 346 aaKnown RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 PIBF1Q8WXW3 757 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 GTF3AQ92664 365 aaKnown RBP3.73□□□□□ -1.81
VPS13A-212ENST00000493341 NMUR2Q9GZQ4 415 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 OR51M1Q9H341 326 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 TUBB1Q9H4B7 451 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 TOPBP1Q92547 1522 aa3.73□□□□□ -1.81
VPS13A-212ENST00000493341 TARBP1Q13395 1621 aaKnown RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 ANKRD30BQ9BXX2 1392 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 ZNF705EA8MWA4 302 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 B4DXG7 233 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 SAP18O00422 153 aaKnown RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 CHMP2AO43633 222 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 OR7A10O76100 309 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 STAMBPO95630 424 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 UBTFL6P0CB48 400 aaPredicted RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 UBCP0CG48 685 aaKnown RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 U2AF2P26368 475 aaKnown RBP eCLIP3.72□□□□□ -1.812e-7■■■□□ 15.9
VPS13A-212ENST00000493341 IL12AP29459 219 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 DDOSTP39656 456 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 SLC1A2P43004 574 aa3.72□□□□□ -1.81
VPS13A-212ENST00000493341 HNRNPA3P51991 378 aaKnown RBP3.72□□□□□ -1.81
VPS13A-212ENST00000493341 EFNA3P52797 238 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms