RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CNOT9Q92600 299 aaKnown RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 PMM1Q92871 262 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 RAB8BQ92930 207 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 DOK1Q99704 481 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 SAP130Q9H0E3 1048 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 A0A096LPE4 126 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 ARPC4-TTLL3A0A0A6YYG9 625 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 A0A1W2PPZ6 126 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 SH3PXD2BA1X283 911 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 ZNF587BE7ETH6 402 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 LYNX1G3V0Z9 82 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 IGLV1-44P01699 117 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 FAM153BP0C7A2 387 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 LYNX1P0DP58 116 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 NPR2P20594 1047 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 PAX7P23759 505 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 TACR3P29371 465 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 THBS4P35443 961 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 HGFACQ04756 655 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 CEACAM7Q14002 265 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 OR7A5Q15622 319 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 ADRM1Q16186 407 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 C3orf36Q3SXR2 165 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 OR4F3Q6IEY1 312 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 UGT2A3Q6UWM9 527 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 DEF8Q6ZN54 512 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 SPATA21Q7Z572 469 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 GPAT4Q86UL3 456 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 HOMEZQ8IX15 550 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 NUP37Q8NFH4 326 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 BCL2L2Q92843 193 aaPredicted RBP12.09□□□□□ -0.47
VARS-227ENST00000489979 ROPN1LQ96C74 230 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 ALKBH3Q96Q83 286 aaPredicted RBP12.09□□□□□ -0.47
VARS-227ENST00000489979 SF3B5Q9BWJ5 86 aaKnown RBP12.09□□□□□ -0.47
VARS-227ENST00000489979 ZNF442Q9H7R0 627 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 POLE3Q9NRF9 147 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 MID2Q9UJV3 735 aa12.09□□□□□ -0.47
VARS-227ENST00000489979 TMEM129A0AVI4 362 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 TMEM89A2RUT3 159 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 VSTM5A8MXK1 200 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 B4DSR2 109 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 NPHS1O60500 1241 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 RGS9O75916 674 aaPredicted RBP12.08□□□□□ -0.48
VARS-227ENST00000489979 AGR2O95994 175 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 GPIP06744 558 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 IGFBP1P08833 259 aaPredicted RBP12.08□□□□□ -0.48
VARS-227ENST00000489979 CELA3BP08861 270 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 ADRA2AP08913 450 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 G6PDP11413 515 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 KRT4P19013 534 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 SELENOPP49908 381 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 GPAT3Q53EU6 434 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 LINGO2Q7L985 606 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 MYPOPQ86VE0 399 aaPredicted RBP12.08□□□□□ -0.48
VARS-227ENST00000489979 GLCCI1Q86VQ1 547 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 C4orf33Q8N1A6 199 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 OR4A15Q8NGL6 344 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 GCDHQ92947 438 aaPredicted RBP12.08□□□□□ -0.48
VARS-227ENST00000489979 TXLNGYQ9BZA5 131 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 NELFAQ9H3P2 528 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 DYNLRB1Q9NP97 96 aa12.08□□□□□ -0.48
VARS-227ENST00000489979 PRAMEF27A3QJZ7 478 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 LIPT2A6NK58 231 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 AQP7P3A6NL99 342 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 RNASET2O00584 256 aaKnown RBP12.07□□□□□ -0.48
VARS-227ENST00000489979 SCN2BO60939 215 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 IGKV3-15P01624 115 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 SHBGP04278 402 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 ALDH3A1P30838 453 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 HPCAP84074 193 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 IL1RL1Q01638 556 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 CDK20Q8IZL9 346 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 MNS1Q8NEH6 495 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 MAGEE2Q8TD90 523 aaPredicted RBP12.07□□□□□ -0.48
VARS-227ENST00000489979 ZNF418Q8TF45 676 aaPredicted RBP12.07□□□□□ -0.48
VARS-227ENST00000489979 CKAP2Q8WWK9 683 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 ANKRD27Q96NW4 1050 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 ZNF317Q96PQ6 595 aaPredicted RBP12.07□□□□□ -0.48
VARS-227ENST00000489979 TPK1Q9H3S4 243 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 PIF1Q9H611 641 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 LPAR2Q9HBW0 351 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 HIF1ANQ9NWT6 349 aa12.07□□□□□ -0.48
VARS-227ENST00000489979 OR6C65A6NJZ3 312 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 SMIM23A6NLE4 172 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 FAM157AC9JC47 383 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 UPK3AO75631 287 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 CPSF4O95639 269 aaKnown RBP12.06□□□□□ -0.48
VARS-227ENST00000489979 UQCRC2P22695 453 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 KHKP50053 298 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 P2RY4P51582 365 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 MAP2K6P52564 334 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 CLDN8P56748 225 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 TMEM225Q6GV28 225 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 NIPAL3Q6P499 406 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 THSD4Q6ZMP0 1018 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 ZCCHC23Q6ZST2 131 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 CREB3L2Q70SY1 520 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 ANKRD46Q86W74 232 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 FAM169BQ8N8A8 192 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms