RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 MRPS31Q92665 395 aaKnown RBP1.57□□□□□ -2.16
CPSF3-205ENST00000489629 TUBGCP2Q9BSJ2 902 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 SPATA16Q9BXB7 569 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 NT5C3AQ9H0P0 336 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 UFSP2Q9NUQ7 469 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 STOX2Q9P2F5 926 aaPredicted RBP1.57□□□□□ -2.16
CPSF3-205ENST00000489629 DCDC2Q9UHG0 476 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 UBQLN1Q9UMX0 589 aaKnown RBP1.57□□□□□ -2.16
CPSF3-205ENST00000489629 POLDIP2Q9Y2S7 368 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 PNPLA6Q8IY17 1366 aa1.57□□□□□ -2.16
CPSF3-205ENST00000489629 ATP10AO60312 1499 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 IGLV4-69A0A075B6H9 119 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 A0A0G2JRQ6 117 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 A0A1B0GUS0 222 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 CLRN2A0PK11 232 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 SERPINE3A8MV23 424 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TRDCB7Z8K6 153 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 E7ESA3 106 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 F5H6K3 240 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 N4BP1O75113 896 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 SURF6O75683 361 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 MMP1P03956 469 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 LGALS2P05162 132 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 CAPN1P07384 714 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 PNMTP11086 282 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 POLR2EP19388 210 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 COX5AP20674 150 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 IMPDH1P20839 514 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 YWHABP31946 246 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 UGT1A5P35504 534 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 PTGDSP41222 190 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TDO2P48775 406 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 CASP4P49662 377 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 LHX2P50458 406 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 BIDP55957 195 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TNFRSF17Q02223 184 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 KLRC3Q07444 240 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 CCDC173Q0VFZ6 552 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 GRB7Q14451 532 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 GANABQ14697 944 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 LY6EQ16553 131 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TRIM16LQ309B1 348 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 KLF17Q5JT82 389 aaPredicted RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 GPRC6AQ5T6X5 926 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 ATL3Q6DD88 541 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 ZSCAN25Q6NSZ9 544 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 PMF1Q6P1K2 205 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 IGFL1Q6UW32 110 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 UQCC3Q6UW78 93 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 LRRC31Q6UY01 552 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 CCDC80Q76M96 950 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 NLRP9Q7RTR0 991 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 FAM220AQ7Z4H9 259 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 LINC01551Q86U37 167 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 MTURNQ8N3F0 131 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 FAM71E2Q8N5Q1 922 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TMEM252Q8N6L7 170 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 EIF1ADQ8N9N8 165 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 OR9A1PQ8NGU1 263 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TCTEX1D2Q8WW35 142 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 SLC41A3Q96GZ6 507 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 PGLYRP4Q96LB8 373 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 MTMR9Q96QG7 549 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 NPAS2Q99743 824 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 ARHGDIGQ99819 225 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 GAL3ST1Q99999 423 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 VCX2Q9H322 139 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 LRRN3Q9H3W5 708 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 ZDHHC11Q9H8X9 412 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 POPDC2Q9HBU9 364 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 EXTL2Q9UBQ6 330 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 ZNF225Q9UK10 706 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 RRP15Q9Y3B9 282 aaKnown RBP1.56□□□□□ -2.16
CPSF3-205ENST00000489629 TIMM10BQ9Y5J6 103 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 CLSPNQ9HAW4 1339 aa1.56□□□□□ -2.16
CPSF3-205ENST00000489629 IGKV1D-17A0A075B6S4 117 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 TRAV26-1A0A087WT03 109 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 A6NDX4 124 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 FOXE1O00358 373 aaPredicted RBP1.55□□□□□ -2.16
CPSF3-205ENST00000489629 DCTN6O00399 190 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 NBR2O15453 112 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 PRKAB2O43741 272 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 SNX4O95219 450 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 LGI1O95970 557 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 INSP01308 110 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 PCCAP05165 728 aaPredicted RBP1.55□□□□□ -2.16
CPSF3-205ENST00000489629 RBMY1CP0DJD4 496 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 TBPP20226 339 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 NPR2P20594 1047 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 CCNCP24863 283 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 MAP3K8P41279 467 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 GRIA1P42261 906 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 ZNF136P52737 540 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 EFNB2P52799 333 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 AIF1P55008 147 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 RIPK1Q13546 671 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 PDK3Q15120 406 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 NSUN5P1Q3KNT7 163 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 SFT2D3Q587I9 215 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 C1orf220Q5T0J3 134 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms