RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 GPA33Q99795 319 aa12.18□□□□□ -0.46
HMGN1-216ENST00000486741 ATG5Q9H1Y0 275 aa12.18□□□□□ -0.46
HMGN1-216ENST00000486741 ASB6Q9NWX5 421 aa12.18□□□□□ -0.46
HMGN1-216ENST00000486741 DKKL1Q9UK85 242 aa12.18□□□□□ -0.46
HMGN1-216ENST00000486741 PRAMEF25A6NGN4 478 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 HSD17B7P56937 341 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 PRKCDQ05655 676 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 MANEAQ5SRI9 462 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 PAPD4Q6PIY7 484 aaKnown RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ZAR1Q86SH2 424 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 CADM3Q8N126 398 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 OR5L2Q8NGL0 311 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ZNF717Q9BY31 904 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 NUDT15Q9NV35 164 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 DHDHQ9UQ10 334 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 THBS1P07996 1170 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 HBQ1P09105 142 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 SBK2P0C263 348 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 MAPK3P27361 379 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 FOXL2P58012 376 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 POU3F1Q03052 451 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 SNTA1Q13424 505 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ARFRP1Q13795 201 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 PPP1R3BQ86XI6 285 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ZNF283Q8N7M2 679 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ABHD4Q8TB40 342 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 LMF2Q9BU23 707 aaKnown RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 SLIRPQ9GZT3 109 aaKnown RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 COMMD9Q9P000 198 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 NSA2O95478 260 aaKnown RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 C4BPBP20851 252 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 MLC1Q15049 377 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 KLHL26Q53HC5 615 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 OR2L13Q8N349 312 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 NT5CQ8TCD5 201 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 NEK7Q8TDX7 302 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 TMEM246Q9BRR3 403 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 GAREM1Q9H706 876 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 GPN1Q9HCN4 374 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 INIPQ9NRY2 104 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ING1Q9UK53 422 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 RNF215Q9Y6U7 377 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 METTL12A8MUP2 240 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 I3L521 148 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 SURF4O15260 269 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 PLATP00750 562 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 YES1P07947 543 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 HCKP08631 526 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 RIDAP52758 137 aaKnown RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 C16orf47Q6ZP98 133 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 SYT13Q7L8C5 426 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 DNAJC5GQ8N7S2 189 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 INTS14Q96SY0 518 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 THAP7Q9BT49 309 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-216ENST00000486741 ULBP3Q9BZM4 244 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 OR11A1Q9GZK7 315 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 MED17Q9NVC6 651 aa12.17□□□□□ -0.46
HMGN1-216ENST00000486741 MEIOCA2RUB1 952 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 TP53I11O14683 189 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 MAB21L1Q13394 359 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 TRAM1Q15629 374 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 MRM1Q6IN84 353 aaKnown RBP12.16□□□□□ -0.46
HMGN1-216ENST00000486741 FAM180AQ6UWF9 173 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 GRPEL2Q8TAA5 225 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 GPBAR1Q8TDU6 330 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 CCDC74AQ96AQ1 378 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 KLHL15Q96M94 604 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 ANKRD19PQ9H560 264 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 MED11Q9P086 117 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 PRAMEF27A3QJZ7 478 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 BRINP1O60477 761 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 TBX19O60806 448 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 PITPNBP48739 271 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 SIRPAP78324 504 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 EIF2B1Q14232 305 aaKnown RBP12.16□□□□□ -0.46
HMGN1-216ENST00000486741 P2RY14Q15391 338 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 MCEMP1Q8IX19 187 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 SLC2A12Q8TD20 617 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 RHBDD1Q8TEB9 315 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 TMEM41AQ96HV5 264 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 OR10A4Q9H209 315 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 RNF121Q9H920 327 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 IFT46Q9NQC8 304 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 FSCN3Q9NQT6 498 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 PRDM9Q9NQV7 894 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 ANKRD10Q9NXR5 420 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 CHST2Q9Y4C5 530 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 RTTNQ86VV8 2226 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 PRKACBP22694 351 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 SMAD4Q13485 552 aaKnown RBP12.16□□□□□ -0.46
HMGN1-216ENST00000486741 CBFBQ13951 182 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 KIF18BQ86Y91 864 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 OR5M1Q8NGP8 315 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 FCAMRQ8WWV6 532 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 SLC46A1Q96NT5 459 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 KLF15Q9UIH9 416 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 OSGIN1Q9UJX0 560 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 SRPK3Q9UPE1 567 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 BOLA1Q9Y3E2 137 aa12.16□□□□□ -0.46
HMGN1-216ENST00000486741 SUSD5O60279 629 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms