RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 EMC7Q9NPA0 242 aa10.21□□□□□ -0.77
HDAC6-228ENST00000486227 TMPRSS11EQ9UL52 423 aa10.21□□□□□ -0.77
HDAC6-228ENST00000486227 SH2B3Q9UQQ2 575 aa10.21□□□□□ -0.77
HDAC6-228ENST00000486227 LOC100509620A0A075B734 347 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 HMGN4O00479 90 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 OR2T1O43869 369 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 MAS1P04201 325 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 GABRA5P31644 462 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 DCAF7P61962 342 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 FCN2Q15485 313 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 SAXO2Q658L1 398 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 WBP2NLQ6ICG8 309 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 ETFBKMTQ8IXQ9 262 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 OR6F1Q8NGZ6 308 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 RADILQ96JH8 1075 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 MED20Q9H944 212 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 ATP13A2Q9NQ11 1180 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 MCTS1Q9ULC4 181 aaKnown RBP10.21□□□□□ -0.78
HDAC6-228ENST00000486227 ARPC5O15511 151 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 GDF1P27539 372 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 ETV1P50549 477 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 PRKXP51817 358 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 RAB5BP61020 215 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 GK2Q14410 553 aaPredicted RBP10.21□□□□□ -0.78
HDAC6-228ENST00000486227 FAM76BQ5HYJ3 339 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 FAM69AQ5T7M9 428 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 EEF1A1P5Q5VTE0 462 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 LIX1LQ8IVB5 337 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 SLC35F2Q8IXU6 374 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 SLC7A13Q8TCU3 470 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 PITX2Q99697 317 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 SLC6A13Q9NSD5 602 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 SLC17A4Q9Y2C5 497 aa10.21□□□□□ -0.78
HDAC6-228ENST00000486227 ASPDHA6ND91 283 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 B4DXG7 233 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 GATBO75879 557 aaKnown RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PTBP1P26599 531 aaKnown RBP eCLIP10.2□□□□□ -0.781e-16■■■■■ 43.3
HDAC6-228ENST00000486227 GIFP27352 417 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PRKAR1BP31321 381 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PSMB10P40306 273 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 BTG1P62324 171 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PXDC1Q5TGL8 231 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 BCDIN3DQ7Z5W3 292 aaKnown RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PTOV1Q86YD1 416 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 ANKRD53Q8N9V6 530 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 OR5W2Q8NH69 310 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 CNOT9Q92600 299 aaKnown RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 CDCA4Q9BXL8 241 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 GABARAPL3Q9BY60 117 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 SIDT1Q9NXL6 827 aaKnown RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 KLHL9Q9P2J3 617 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 BOKQ9UMX3 212 aaPredicted RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 POLHQ9Y253 713 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 ZNF264O43296 627 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 RAD1O60671 282 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 GABRG2P18507 467 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 TIAL1Q01085 375 aaKnown RBP eCLIP10.2□□□□□ -0.783e-9■□□□□ 10.5
HDAC6-228ENST00000486227 SLC18B1Q6NT16 456 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 KLHDC8BQ8IXV7 354 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 OR14A16Q8NHC5 309 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 HMGCLL1Q8TB92 370 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 KCTD12Q96CX2 325 aaKnown RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 SENP5Q96HI0 755 aaPredicted RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 OR5B2Q96R09 309 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 TNFRSF13CQ96RJ3 184 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PLSCR3Q9NRY6 295 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 MBD1Q9UIS9 605 aaPredicted RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 A0A1B0GWA3 101 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 TTLL8A6PVC2 850 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 F5H0A9 414 aaPredicted RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 F13BP05160 661 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 ACP2P11117 423 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 PGAM2P15259 253 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 ABOP16442 354 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 FGL1Q08830 312 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 CBFBQ13951 182 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 TMEM179BQ7Z7N9 219 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 TMEM255BQ8WV15 326 aa10.2□□□□□ -0.78
HDAC6-228ENST00000486227 RBPMSQ93062 196 aaKnown RBP10.2□□□□□ -0.78
HDAC6-228ENST00000486227 SERINC4A6NH21 518 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 ATP6V1G2-DDX39BF2Z307 99 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 WRBO00258 174 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 YY2O15391 372 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 FGF17O60258 216 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 INHBBP09529 407 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 KCNAB1Q14722 419 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 OR7A5Q15622 319 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 IL20RBQ6UXL0 311 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 MEPCEQ7L2J0 689 aaKnown RBP10.19□□□□□ -0.78
HDAC6-228ENST00000486227 CCDC190Q86UF4 302 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 ZNF615Q8N8J6 731 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 CCDC74AQ96AQ1 378 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 LYRM4Q9HD34 91 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 ACER3Q9NUN7 267 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 MRPL15Q9P015 296 aaKnown RBP10.19□□□□□ -0.78
HDAC6-228ENST00000486227 ZNF878C9JN71 531 aa10.19□□□□□ -0.78
HDAC6-228ENST00000486227 CSO75390 466 aaKnown RBP10.19□□□□□ -0.78
HDAC6-228ENST00000486227 MTRF1O75570 445 aaKnown RBP10.19□□□□□ -0.78
HDAC6-228ENST00000486227 PIPP12273 146 aaPredicted RBP10.19□□□□□ -0.78
HDAC6-228ENST00000486227 MMP11P24347 488 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms