RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MSRB3Q8IXL7 192 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 ZZZ3Q8IYH5 903 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 CLEC18CQ8NCF0 446 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 FAM71CQ8NEG0 241 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 POC1BQ8TC44 478 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 ABHD3Q8WU67 409 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 APH1AQ96BI3 265 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 ZC3HAV1LQ96H79 300 aaKnown RBP7.19□□□□□ -1.26
USP40-216ENST00000485943 FNDC11Q9BVV2 318 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 CCDC106Q9BWC9 280 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 TRIM15Q9C019 465 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 OR11A1Q9GZK7 315 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 OPN3Q9H1Y3 402 aaPredicted RBP7.19□□□□□ -1.26
USP40-216ENST00000485943 RNF122Q9H9V4 155 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 ELOVL5Q9NYP7 299 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 KLHL13Q9P2N7 655 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 ADAM21Q9UKJ8 722 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 TRAPPC4Q9Y296 219 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 POLR3KQ9Y2Y1 108 aaPredicted RBP7.19□□□□□ -1.26
USP40-216ENST00000485943 NCOA6Q14686 2063 aaPredicted RBP7.19□□□□□ -1.26
USP40-216ENST00000485943 DSPPQ9NZW4 1301 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 KIAA1549Q9HCM3 1950 aa7.19□□□□□ -1.26
USP40-216ENST00000485943 MPDZO75970 2070 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 TRBV5-3A0A0A0MS03 114 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 A0A1B0GWA3 101 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 TRAPPC13A5PLN9 417 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 C16orf97H3BN30 126 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 CXCR6O00574 342 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 KPNA4O00629 521 aaPredicted RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 EIF4EBP3O60516 100 aaPredicted RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 SERPINI2O75830 405 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 AQP8O94778 261 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 MFN2O95140 757 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 C1QCP02747 245 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 ZNF43P17038 809 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 ITGA2P17301 1181 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 IL11P20809 199 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 CALB2P22676 271 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 CBLP22681 906 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 CD79BP40259 229 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 RASSF2P50749 326 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 TGFBR3Q03167 851 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 TLE4Q04727 773 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 FOXF2Q12947 444 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 STK11Q15831 433 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 CYBRD1Q53TN4 286 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 SAMD4BQ5PRF9 694 aaKnown RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 FAM91A1Q658Y4 838 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 HIST2H2BCQ6DN03 193 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 VWA1Q6PCB0 445 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 HACD2Q6Y1H2 254 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 NET1Q7Z628 596 aaPredicted RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 CARM1Q86X55 608 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 TUSC5Q8IXB3 177 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 NAXEQ8NCW5 288 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 GEMIN6Q8WXD5 167 aaKnown RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 KISS1RQ969F8 398 aaPredicted RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 MUCL1Q96DR8 90 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 NSL1Q96IY1 281 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 SPOCK3Q9BQ16 436 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 SRXN1Q9BYN0 137 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 POTEKPQ9BYX7 375 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 MYLK2Q9H1R3 596 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 IKZF5Q9H5V7 419 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 GP6Q9HCN6 339 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 B3GAT2Q9NPZ5 323 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 GALNT8Q9NY28 637 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 MAGEL2Q9UJ55 1249 aa7.18□□□□□ -1.26
USP40-216ENST00000485943 SAMD4AQ9UPU9 718 aaKnown RBP7.18□□□□□ -1.26
USP40-216ENST00000485943 TRAV36DV7A0A075B6V5 113 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 LOC100289279A0A1B0GTE1 492 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SH3D21A4FU49 640 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ZNF726A6NNF4 738 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 B2RBV5 119 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 MCIDASD6RGH6 385 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 TPST2O60704 377 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 CYTIPO60759 359 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SS18L1O75177 396 aaPredicted RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 TOXO94900 526 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 AKR7A3O95154 331 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 VAMP5O95183 116 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 LGI1O95970 557 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SERPINA1P01009 418 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 CD8BP10966 210 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SHC1P29353 583 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 AGTR1P30556 359 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 KDELR2P33947 212 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SORDQ00796 357 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 DMTNQ08495 405 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ST3GAL3Q11203 375 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 PMS2P3Q13401 168 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 SNTB1Q13884 538 aaKnown RBP7.17□□□□□ -1.26
USP40-216ENST00000485943 NPTX1Q15818 432 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 TMEM44Q2T9K0 475 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 IFI44LQ53G44 452 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ENTPD8Q5MY95 495 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 FAM69AQ5T7M9 428 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 GLYATQ6IB77 296 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 ZNF613Q6PF04 617 aa7.17□□□□□ -1.26
USP40-216ENST00000485943 PAQR6Q6TCH4 344 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms