RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MFSD13AQ14CX5 517 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 ZNF74Q16587 644 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 SOWAHCQ53LP3 525 aaPredicted RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 ZNF585AQ6P3V2 769 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 ZER1Q7Z7L7 766 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 STK32CQ86UX6 486 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 HIPK1Q86Z02 1210 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 ZDHHC13Q8IUH4 622 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 HS3ST5Q8IZT8 346 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 SVOPLQ8N434 492 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 ST6GALNAC3Q8NDV1 305 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 OR9Q2Q8NGE9 314 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 GNPDA2Q8TDQ7 276 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 FAM46AQ96IP4 442 aaKnown RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 ZNF845Q96IR2 970 aaPredicted RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 DOCK7Q96N67 2140 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 PNPLA3Q9NST1 481 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 STX18Q9P2W9 335 aaKnown RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 NKX1-2Q9UD57 310 aaPredicted RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 TMEM5Q9Y2B1 443 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 MAGED1Q9Y5V3 778 aaPredicted RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 PHF3Q92576 2039 aaKnown RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 EFCAB9A8MZ26 197 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 AHRRA9YTQ3 701 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 B8ZZF3 427 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 FTCDNL1E5RQL4 147 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 PRRG2O14669 202 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 OR7A10O76100 309 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 MT-ATP6P00846 226 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 GASTP01350 101 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 HIST1H2ABP04908 130 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 SAGP10523 405 aaPredicted RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 GTF2E2P29084 291 aaKnown RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 GRPRP30550 384 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 NUP107P57740 925 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 RIPK1Q13546 671 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 ZNF770Q6IQ21 691 aaPredicted RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 PPP4R4Q6NUP7 873 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 C1orf94Q6P1W5 598 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 PGBD2Q6P3X8 592 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 TMPRSS11FQ6ZWK6 438 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 HIST3H2AQ7L7L0 130 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 MAMDC2Q7Z304 686 aaPredicted RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 SLC46A3Q7Z3Q1 461 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 CD163Q86VB7 1156 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 LRRC17Q8N6Y2 441 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 AQP11Q8NBQ7 271 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 FAM57AQ8TBR7 257 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 ZPLD1Q8TCW7 415 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 HIST1H2ACQ93077 130 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 SDCCAG3Q96C92 435 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 ZHX1-C8orf76Q96EF9 292 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 MOGAT1Q96PD6 335 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 FEVQ99581 238 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 TUBA1CQ9BQE3 449 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 NAA11Q9BSU3 229 aaPredicted RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 ASPNQ9BXN1 380 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 SRXN1Q9BYN0 137 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 FKRPQ9H9S5 495 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 RNPEPL1Q9HAU8 725 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 NANSQ9NR45 359 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 PAQR5Q9NXK6 330 aaPredicted RBP10.97□□□□□ -0.65
SDC1-206ENST00000482879 OAZ3Q9UMX2 235 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 MGAT4BQ9UQ53 548 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 ZNF835Q9Y2P0 537 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 PCNX1Q96RV3 2341 aa10.97□□□□□ -0.65
SDC1-206ENST00000482879 ARRDC5A6NEK1 342 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 CLCA1A8K7I4 914 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 PDLIM1O00151 329 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 DNPH1O43598 174 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 EIF1BO60739 113 aaKnown RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 SLC19A2O60779 497 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 AKR7A3O95154 331 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 SYNGR4O95473 234 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 ANXA8P13928 327 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 POU2F1P14859 743 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 ENPP1P22413 925 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 AGFG1P52594 562 aaKnown RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 SF3B4Q15427 424 aaKnown RBP eCLIP10.96□□□□□ -0.65
SDC1-206ENST00000482879 EMC4Q5J8M3 183 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 OTUD3Q5T2D3 398 aaPredicted RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 ANKRD34AQ69YU3 496 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 H1FNTQ75WM6 255 aaPredicted RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 ZNF843Q8N446 348 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 TMEM99Q8N816 258 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 ATG16L2Q8NAA4 619 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 LIPHQ8WWY8 451 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 ROBO4Q8WZ75 1007 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 GTPBP3Q969Y2 492 aaKnown RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 CPNE4Q96A23 557 aaPredicted RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 GPA33Q99795 319 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 CIB1Q99828 191 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 PSD2Q9BQI7 771 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 DGCR6LQ9BY27 220 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 PRRG4Q9BZD6 226 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 ZNF229Q9UJW7 825 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 MCTS1Q9ULC4 181 aaKnown RBP10.96□□□□□ -0.65
SDC1-206ENST00000482879 CORINQ9Y5Q5 1042 aa10.96□□□□□ -0.65
SDC1-206ENST00000482879 INTS1Q8N201 2190 aaKnown RBP10.95□□□□□ -0.66
SDC1-206ENST00000482879 IGHV3-15A0A0B4J1V0 119 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms