RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 IGHG3P01860 377 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 TP53P04637 393 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 RFPL3SP0C7P2 107 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 ZNF24P17028 368 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 GRK5P34947 590 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 GGT2P36268 569 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 GPR4P46093 362 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 RPS5P46782 204 aaKnown RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 B3GALT5-AS1P59052 145 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 EMC4Q5J8M3 183 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 ZNF691Q5VV52 312 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 SLX4IPQ5VYV7 408 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 DPY19L2P2Q6ZN68 376 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 TMPPEQ6ZT21 453 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 H1FNTQ75WM6 255 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 HDDC2Q7Z4H3 204 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 NANOGNBQ7Z5D8 188 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 GALNT5Q7Z7M9 940 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 C10orf53Q8N6V4 93 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 C9orf43Q8TAL5 461 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 NEIL3Q8TAT5 605 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 FANK1Q8TC84 345 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 CYGBQ8WWM9 190 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 PNPLA2Q96AD5 504 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 KTI12Q96EK9 354 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 ABHD17AQ96GS6 310 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 KLHL15Q96M94 604 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 SLC38A2Q96QD8 506 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 NR1H4Q96RI1 486 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 GPA33Q99795 319 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 KLHDC3Q9BQ90 382 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 ARHGAP9Q9BRR9 750 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 NAA11Q9BSU3 229 aaPredicted RBP9.16□□□□□ -0.94
USP39-215ENST00000481409 HES7Q9BYE0 225 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 OR52D1Q9H346 318 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 TBC1D23Q9NUY8 699 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 HRH3Q9Y5N1 445 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 APC2O95996 2303 aa9.16□□□□□ -0.94
USP39-215ENST00000481409 CACNA1AO00555 2505 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 LIPT2A6NK58 231 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 TFECO14948 347 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 ARPC3O15145 178 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 EFNA2O43921 213 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 MITFO75030 526 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 OR6A2O95222 327 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 TFPIP10646 304 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 UQCRC1P31930 480 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 MAGEA5P43359 124 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 ST13P50502 369 aaKnown RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 TPD52P55327 224 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 RAC3P60763 192 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 CXCR4P61073 352 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 RPS3AP61247 264 aaKnown RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 FOXD4Q12950 439 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 MYBPHQ13203 477 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 SF3B4Q15427 424 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP39-215ENST00000481409 ZIK1Q3SY52 487 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 TMEM176BQ3YBM2 270 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 SLC25A30Q5SVS4 291 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 C6orf52Q5T4I8 152 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 FAM205BPQ63HN1 556 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 C12orf73Q69YU5 71 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 GPR139Q6DWJ6 353 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 KRT80Q6KB66 452 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 ARHGAP11AQ6P4F7 1023 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 POMZP3Q6PJE2 187 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 PAQR6Q6TCH4 344 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 CASP12Q6UXS9 341 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 THAP5Q7Z6K1 395 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 CHERPQ8IWX8 916 aaKnown RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 LNX2Q8N448 690 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 RBMXL3Q8N7X1 1067 aaKnown RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 OR8J1Q8NGP2 316 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 CPNE4Q96A23 557 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 Q96MT0 163 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 FN3KQ9H479 309 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 PRORYQ9H606 182 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 IMPAD1Q9NX62 359 aa9.15□□□□□ -0.94
USP39-215ENST00000481409 RPH3AQ9Y2J0 694 aaPredicted RBP9.15□□□□□ -0.94
USP39-215ENST00000481409 SPTBN2O15020 2390 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 TRGV5A0A0B4J1U4 118 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 A0A1W2PNV4 684 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 ZC3H12DA2A288 527 aaKnown RBP9.14□□□□□ -0.95
USP39-215ENST00000481409 SH3D21A4FU49 640 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 OR14I1A6ND48 311 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 SNTNA6NMZ2 147 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 H3BML4 177 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 SULT2B1O00204 365 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 PLPP3O14495 311 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 AQP7O14520 342 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 AHCYL1O43865 530 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 TXNDC12O95881 172 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 IFNGP01579 166 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 IGHMP01871 453 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 CD14P08571 375 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 CPN1P15169 458 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 CCNA2P20248 432 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 POU3F2P20265 443 aaPredicted RBP9.14□□□□□ -0.95
USP39-215ENST00000481409 POU1F1P28069 291 aa9.14□□□□□ -0.95
USP39-215ENST00000481409 DIO1P49895 249 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms