RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 REXO2Q9Y3B8 237 aaKnown RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 USH1CQ9Y6N9 552 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 DOCK11Q5JSL3 2073 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 IGHV3OR16-10A0A075B7F0 116 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 ZNF816-ZNF321PA0A0X1KG74 233 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 WI2-2373I1.2A0A1W2PRP0 233 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 CCDC189A1A4V9 331 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 SYCE1LA8MT33 242 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 GOLGA6L6A8MZA4 724 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 SUPT3HB4E1H0 165 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TRAPPC2LH3BP13 241 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 GTPBP1O00178 669 aaKnown RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 TNFRSF13BO14836 293 aaPredicted RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 EIF4E2O60573 245 aaKnown RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 NME6O75414 186 aaPredicted RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 SUPT3HO75486 399 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 NKX2-2O95096 273 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 LGI1O95970 557 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TFPIP10646 304 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 CDC25BP30305 580 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 GABRA5P31644 462 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 ARL1P40616 181 aaPredicted RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 SLC6A9P48067 706 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 MMP16P51512 607 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 NCBP2P52298 156 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP54-211ENST00000474929 PGGT1BP53609 377 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 KLF3P57682 345 aaPredicted RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 TAS2R39P59534 338 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 ZNF460Q14592 562 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 QPRTQ15274 297 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TRADDQ15628 312 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 CD226Q15762 336 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TIGD2Q4W5G0 525 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TEDDM1Q5T9Z0 273 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 FAM180BQ6P0A1 224 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 PAQR6Q6TCH4 344 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TMEM107Q6UX40 140 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 BRD3OSQ6XYD6 125 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 AAED1Q7RTV5 226 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 JAZF1Q86VZ6 243 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TMCO5AQ8N6Q1 288 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 PAPD5Q8NDF8 572 aaKnown RBP6.76□□□□□ -1.33
USP54-211ENST00000474929 OR5W2Q8NH69 310 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 GPR119Q8TDV5 335 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 GATAD2BQ8WXI9 593 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 EGLN1Q9GZT9 426 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 VPS11Q9H270 941 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 SEC61A2Q9H9S3 476 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 A4GALTQ9NPC4 353 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 SLC12A4Q9UP95 1085 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 TRAPPC4Q9Y296 219 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 GPR45Q9Y5Y3 372 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 ARHGAP32A7KAX9 2087 aa6.76□□□□□ -1.33
USP54-211ENST00000474929 IGHV2-70DA0A0C4DH43 119 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 UPK1AO00322 258 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 RAD51CO43502 376 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 IGKV1D-16P01601 117 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CELA3BP08861 270 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CTAGE8P0CG41 777 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CD1DP15813 335 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 TSPAN8P19075 237 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 ATP6V1C1P21283 382 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 STX2P32856 288 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CRHR1P34998 444 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 APOBEC1P41238 236 aaKnown RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 ASMTP46597 345 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 SLC35A1P78382 337 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 EGFEM1PQ0D2K5 195 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 PDE7AQ13946 482 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 SLC17A1Q14916 467 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 FXNQ16595 210 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 RGS7BPQ6MZT1 257 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 ZC3HC1Q86WB0 502 aaKnown RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 TMEM139Q8IV31 216 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CTAGE4Q8IX94 777 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 MUC20Q8N307 709 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 WFDC9Q8NEX5 89 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 IPCEF1Q8WWN9 437 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 CCL17Q92583 94 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 HOXB13Q92826 284 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 AURKBQ96GD4 344 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 HES6Q96HZ4 224 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 PLEKHA8Q96JA3 519 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 C3orf30Q96M34 536 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CDK15Q96Q40 435 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 ALKBH3Q96Q83 286 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 TOR3AQ9H497 397 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 ELOVL6Q9H5J4 265 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 ACSS3Q9H6R3 686 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 BRF2Q9HAW0 419 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 TAAR3PQ9P1P4 343 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CHRNA9Q9UGM1 479 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 VPREB3Q9UKI3 123 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CARD8Q9Y2G2 431 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 CAB39Q9Y376 341 aaPredicted RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 TNPO3Q9Y5L0 923 aaKnown RBP6.75□□□□□ -1.33
USP54-211ENST00000474929 NPTNQ9Y639 398 aa6.75□□□□□ -1.33
USP54-211ENST00000474929 DNAH7Q8WXX0 4024 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 IGLV3-9A0A075B6K5 115 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 GXYLT2A0PJZ3 443 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms