RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 FAM234BA2RU67 622 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 AQP7P3A6NL99 342 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 MPGP29372 298 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 ACAA2P42765 397 aaKnown RBP16.78■□□□□ 0.28
COL9A3-206ENST00000466532 CRISP3P54108 245 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 DSTNP60981 165 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 COPZ1P61923 177 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 BNIP2Q12982 314 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 ATG16L1Q676U5 607 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 WBP2NLQ6ICG8 309 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 GPAT4Q86UL3 456 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 ZIC4Q8N9L1 334 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 ZNF385AQ96PM9 386 aaKnown RBP16.78■□□□□ 0.28
COL9A3-206ENST00000466532 SF3B5Q9BWJ5 86 aaKnown RBP16.78■□□□□ 0.28
COL9A3-206ENST00000466532 FKRPQ9H9S5 495 aa16.78■□□□□ 0.28
COL9A3-206ENST00000466532 ZNF443Q9Y2A4 671 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-206ENST00000466532 SLCO1B7G3V0H7 640 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 GPRIN2O60269 458 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 TFPTP0C1Z6 253 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 CDH2P19022 906 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-206ENST00000466532 DSCR9P59020 149 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 PRPS1P60891 318 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 LARS2Q15031 903 aaKnown RBP16.77■□□□□ 0.28
COL9A3-206ENST00000466532 RPS26P11Q5JNZ5 115 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-206ENST00000466532 RNF220Q5VTB9 566 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 KLHL24Q6TFL4 600 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 POMGNT2Q8NAT1 580 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 OR10H5Q8NGA6 315 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 SLC38A5Q8WUX1 472 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 MAELQ96JY0 434 aaKnown RBP16.77■□□□□ 0.28
COL9A3-206ENST00000466532 TAPBPLQ9BX59 468 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 TPT1P8Q9HAU6 139 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 ADPRHL2Q9NX46 363 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 PRDM4Q9UKN5 801 aa16.77■□□□□ 0.28
COL9A3-206ENST00000466532 CUBNO60494 3623 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 COL6A5A8TX70 2615 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 A8MVM7 634 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 H7C417 338 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 WNT11O96014 354 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 ZCCHC18P0CG32 403 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 NCF2P19878 526 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-206ENST00000466532 GTDC1Q4AE62 458 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 SLC9B1Q4ZJI4 515 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 C1QTNF12Q5T7M4 302 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 TMEM225Q6GV28 225 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 HMBOX1Q6NT76 420 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 HIPK1Q86Z02 1210 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 CLIP4Q8N3C7 705 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 ZNF525Q8N782 197 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 AURKBQ96GD4 344 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-206ENST00000466532 TMEM19Q96HH6 336 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 ITCHQ96J02 903 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 PIF1Q9H611 641 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 RMND5AQ9H871 391 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 CACYBPQ9HB71 228 aaKnown RBP16.76■□□□□ 0.27
COL9A3-206ENST00000466532 ZIM2Q9NZV7 527 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 ATRQ13535 2644 aa16.76■□□□□ 0.27
COL9A3-206ENST00000466532 A0A096LNT2 108 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 TMEM247A6NEH6 219 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 A8MV72 311 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-206ENST00000466532 ATP6V1G2-DDX39BF2Z307 99 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 FRS3O43559 492 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 KRT33AO76009 404 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 BMP4P12644 408 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 PRG2P13727 222 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 APOBEC3AP31941 199 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-206ENST00000466532 CHRNB3Q05901 458 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 ZSWIM7Q19AV6 140 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 HIKESHIQ53FT3 197 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 C6orf10Q5SRN2 563 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 C1orf140Q5VVS0 124 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 MSANTD1Q6ZTZ1 278 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 ABHD12BQ7Z5M8 362 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-206ENST00000466532 OR9I1Q8NGQ6 314 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 SPATA3Q8NHX4 192 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 SPATA9Q9BWV2 254 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 MANSC1Q9H8J5 431 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 SDR39U1Q9NRG7 319 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-206ENST00000466532 THUMPD1Q9NXG2 353 aaKnown RBP16.75■□□□□ 0.27
COL9A3-206ENST00000466532 ZNF232Q9UNY5 417 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 MXRA5Q9NR99 2828 aa16.75■□□□□ 0.27
COL9A3-206ENST00000466532 A0A0G2JPF8 293 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 ELOA3DA6NLF2 546 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-206ENST00000466532 HNRNPCL2B2RXH8 293 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 HNRNPCL3B7ZW38 293 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 KLF11O14901 512 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 HNRNPCL1O60812 293 aaKnown RBP16.74■□□□□ 0.27
COL9A3-206ENST00000466532 HNRNPCL4P0DMR1 293 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 SELENOPP49908 381 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 P2RY4P51582 365 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 POLR2JP52435 117 aaKnown RBP16.74■□□□□ 0.27
COL9A3-206ENST00000466532 TMEM249Q2WGJ8 235 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 ELOA3BQ3SY89 546 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 MAVSQ7Z434 540 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 SERPINA11Q86U17 422 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 ELOA3Q8NG57 546 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 FAM168AQ92567 244 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 VPS33AQ96AX1 596 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 C3orf49Q96BT1 292 aa16.74■□□□□ 0.27
COL9A3-206ENST00000466532 OR52B2Q96RD2 323 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms