RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ELOA3Q8NG57 546 aa15.81■□□□□ 0.12
COL7A1-205ENST00000465238 CPNE4Q96A23 557 aaPredicted RBP15.81■□□□□ 0.12
COL7A1-205ENST00000465238 SLC47A1Q96FL8 570 aa15.81■□□□□ 0.12
COL7A1-205ENST00000465238 OR11A1Q9GZK7 315 aa15.81■□□□□ 0.12
COL7A1-205ENST00000465238 C1orf21Q9H246 121 aa15.81■□□□□ 0.12
COL7A1-205ENST00000465238 COQ10BQ9H8M1 238 aa15.81■□□□□ 0.12
COL7A1-205ENST00000465238 HDGFL3Q9Y3E1 203 aa15.81■□□□□ 0.12
COL7A1-205ENST00000465238 A8MVM7 634 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 TPST2O60704 377 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 SERPINA1P01009 418 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 PNMTP11086 282 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 BNIP2Q12982 314 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 ALG10BQ5I7T1 473 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 GTF2IRD2BQ6EKJ0 949 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 FKBP9P1Q75LS8 142 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 GTF2IRD2Q86UP8 949 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 RBM45Q8IUH3 476 aaKnown RBP15.8■□□□□ 0.12
COL7A1-205ENST00000465238 OR4D11Q8NGI4 311 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 POTEKPQ9BYX7 375 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 C12orf10Q9HB07 376 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 DLL4Q9NR61 685 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 TAS2R1Q9NYW7 299 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 RPS6KA6Q9UK32 745 aa15.8■□□□□ 0.12
COL7A1-205ENST00000465238 CPSF4LA6NMK7 179 aaKnown RBP15.79■□□□□ 0.12
COL7A1-205ENST00000465238 TNFRSF1BP20333 461 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 MSX2P35548 267 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-205ENST00000465238 DIO1P49895 249 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 CEACAM7Q14002 265 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 POU4F3Q15319 338 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 NPTX1Q15818 432 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 ENTPD8Q5MY95 495 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 ZNF613Q6PF04 617 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 CBLL1Q75N03 491 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 ROBO4Q8WZ75 1007 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 STARD4Q96DR4 205 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 ZHX1-C8orf76Q96EF9 292 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 DNAJA3Q96EY1 480 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 ARL5BQ96KC2 179 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 SRXN1Q9BYN0 137 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 MAGEL2Q9UJ55 1249 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 PRPF19Q9UMS4 504 aaKnown RBP15.79■□□□□ 0.12
COL7A1-205ENST00000465238 TRAPPC4Q9Y296 219 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 TESMINQ9Y4I5 508 aa15.79■□□□□ 0.12
COL7A1-205ENST00000465238 A0A0B4J2E0 115 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 A0A1B0GX12 115 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 TMEM229AB2RXF0 380 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 GYG2O15488 501 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 SMNDC1O75940 238 aaKnown RBP eCLIP15.78■□□□□ 0.12
COL7A1-205ENST00000465238 AQP8O94778 261 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 PMS2P2O95744 297 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 PLGP00747 810 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-205ENST00000465238 ENPP1P22413 925 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 IDUAP35475 653 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 OR1E2P47887 323 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 OR2B6P58173 313 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 ZNF239Q16600 458 aaKnown RBP15.78■□□□□ 0.12
COL7A1-205ENST00000465238 SWT1Q5T5J6 900 aaKnown RBP15.78■□□□□ 0.12
COL7A1-205ENST00000465238 C6orf89Q6UWU4 347 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 DEF8Q6ZN54 512 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 FCRLAQ7L513 359 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 VTCN1Q7Z7D3 282 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 CNEP1R1Q8N9A8 125 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 STK35Q8TDR2 534 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 SLC38A4Q969I6 547 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 GORASP2Q9H8Y8 452 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 RNF122Q9H9V4 155 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 BEX4Q9NWD9 120 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-205ENST00000465238 SNX13Q9Y5W8 968 aa15.78■□□□□ 0.12
COL7A1-205ENST00000465238 A0A1W2PPR1 153 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 ZC3H12DA2A288 527 aaKnown RBP15.77■□□□□ 0.12
COL7A1-205ENST00000465238 TRAPPC13A5PLN9 417 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 CD53P19397 219 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 HOXC12P31275 282 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 CD79BP40259 229 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 CDH12P55289 794 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 SLC35A1P78382 337 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 FAM27E3Q08E93 113 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 FXNQ16595 210 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 IFI44LQ53G44 452 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 C1orf140Q5VVS0 124 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 VWA1Q6PCB0 445 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 SLC43A2Q8N370 569 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 ADAMTS16Q8TE57 1224 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 GEMIN6Q8WXD5 167 aaKnown RBP15.77■□□□□ 0.12
COL7A1-205ENST00000465238 HSH2DQ96JZ2 352 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 TAPBPLQ9BX59 468 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 POLR2J2Q9GZM3 115 aaKnown RBP15.77■□□□□ 0.12
COL7A1-205ENST00000465238 PCDHAC1Q9H158 963 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 POLR2J3Q9H1A7 115 aaKnown RBP15.77■□□□□ 0.12
COL7A1-205ENST00000465238 GLRX2Q9NS18 164 aa15.77■□□□□ 0.12
COL7A1-205ENST00000465238 DCAF13Q9NV06 445 aaKnown RBP15.77■□□□□ 0.12
COL7A1-205ENST00000465238 SAMD4AQ9UPU9 718 aaKnown RBP15.77■□□□□ 0.12
COL7A1-205ENST00000465238 A0A087WUJ7 227 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 IGHV3-15A0A0B4J1V0 119 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 ARPC2O15144 300 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 DNPH1O43598 174 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 PRKD3O94806 890 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 AHSA1O95433 338 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 IFNW1P05000 195 aa15.76■□□□□ 0.11
COL7A1-205ENST00000465238 IFNA8P32881 189 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms