RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TGFBR3Q03167 851 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 BNIP2Q12982 314 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 VEZF1Q14119 521 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 SLC17A1Q14916 467 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 TTMPQ5BVD1 217 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 KLHL24Q6TFL4 600 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 CLIP4Q8N3C7 705 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 C17orf78Q8N4C9 275 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 TMEM99Q8N816 258 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 C1orf162Q8NEQ5 155 aaPredicted RBP12.28□□□□□ -0.44
USP4-206ENST00000461553 OR9K2Q8NGE7 335 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 MAL2Q969L2 176 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 SLC35B4Q969S0 331 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 C3orf49Q96BT1 292 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 RADILQ96JH8 1075 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 SF3B5Q9BWJ5 86 aaKnown RBP12.28□□□□□ -0.44
USP4-206ENST00000461553 BCL2L10Q9HD36 194 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 CISD1Q9NZ45 108 aaKnown RBP12.28□□□□□ -0.44
USP4-206ENST00000461553 RPS6KB2Q9UBS0 482 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 POU2F3Q9UKI9 436 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 CORO2BQ9UQ03 480 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 MGAT4BQ9UQ53 548 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 AMDHD2Q9Y303 409 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 SLC25A15Q9Y619 301 aa12.28□□□□□ -0.44
USP4-206ENST00000461553 JMJD1CQ15652 2540 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 A0A1W2PR80 420 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 TMEM229AB2RXF0 380 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 SHISA9B4DS77 424 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 AHSA1O95433 338 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 LY6G6DO95868 133 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 ARAFP10398 606 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 PRG2P13727 222 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 HOXB9P17482 250 aaPredicted RBP12.27□□□□□ -0.45
USP4-206ENST00000461553 PTAFRP25105 342 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 NTF4P34130 210 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 ATP4BP51164 291 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 ZNF83P51522 516 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 NCALDP61601 193 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 IRX1P78414 480 aaPredicted RBP12.27□□□□□ -0.45
USP4-206ENST00000461553 SQLEQ14534 574 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 PGGHGQ32M88 737 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 LRIF1Q5T3J3 769 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 C9orf135Q5VTT2 229 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 C1orf140Q5VVS0 124 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 BLOC1S3Q6QNY0 202 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 SLC22A25Q6T423 547 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 AAED1Q7RTV5 226 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 ABHD12BQ7Z5M8 362 aaPredicted RBP12.27□□□□□ -0.45
USP4-206ENST00000461553 NFKBIDQ8NI38 313 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 AMBRA1Q9C0C7 1298 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 SLCO5A1Q9H2Y9 848 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 PIF1Q9H611 641 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 SLC7A10Q9NS82 523 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.27□□□□□ -0.45
USP4-206ENST00000461553 ABCA1O95477 2261 aa12.27□□□□□ -0.45
USP4-206ENST00000461553 SONP18583 2426 aaKnown RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 ELOA3DA6NLF2 546 aaPredicted RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 HMGB1P1B2RPK0 211 aaPredicted RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 M0R1B8 84 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 OVOL3O00110 214 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 PDLIM1O00151 329 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 KRT33AO76009 404 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 ETS2P15036 469 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 MPGP29372 298 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 PRKAR1BP31321 381 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 SPOCK1Q08629 439 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 GABRA6Q16445 453 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 CLEC12BQ2HXU8 276 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 ELOA3BQ3SY89 546 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 TSPO2Q5TGU0 170 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 TMEM225Q6GV28 225 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 KRT73Q86Y46 540 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 FUNDC1Q8IVP5 155 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 DEPDC4Q8N2C3 294 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 POMGNT2Q8NAT1 580 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 ELOA3Q8NG57 546 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 STK35Q8TDR2 534 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 HS6ST2Q96MM7 605 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 MUS81Q96NY9 551 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 TRAF4Q9BUZ4 470 aaPredicted RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 SPATA5L1Q9BVQ7 753 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 INTS9Q9NV88 658 aaKnown RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 ARGLU1Q9NWB6 273 aaPredicted RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 TMEM45AQ9NWC5 275 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 SLC25A37Q9NYZ2 338 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 CHST2Q9Y4C5 530 aa12.26□□□□□ -0.45
USP4-206ENST00000461553 CHD3Q12873 2000 aaKnown RBP12.26□□□□□ -0.45
USP4-206ENST00000461553 ANK3Q12955 4377 aaKnown RBP12.25□□□□□ -0.45
USP4-206ENST00000461553 ARFGEF3Q5TH69 2177 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 ALPK2Q86TB3 2170 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 EVPLLA8MZ36 301 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 VAMP5O95183 116 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 CD40P25942 277 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 FOXG1P55316 489 aaPredicted RBP12.25□□□□□ -0.45
USP4-206ENST00000461553 HOXC5Q00444 222 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 CDK6Q00534 326 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 AGKQ53H12 422 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 C1QTNF12Q5T7M4 302 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 AGAP6Q5VW22 663 aa12.25□□□□□ -0.45
USP4-206ENST00000461553 REEP3Q6NUK4 255 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms