RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 OR9A4Q8NGU2 314 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 WDR36Q8NI36 951 aaKnown RBP4.93□□□□□ -1.62
VPS41-209ENST00000457055 WIPF2Q8TF74 440 aaPredicted RBP4.93□□□□□ -1.62
VPS41-209ENST00000457055 ASB10Q8WXI3 467 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 PIGCQ92535 297 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 TM9SF4Q92544 642 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 NR4A3Q92570 626 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 LPAR1Q92633 364 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 CREB3L1Q96BA8 519 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 TSNAXQ99598 290 aaKnown RBP4.93□□□□□ -1.62
VPS41-209ENST00000457055 LMF2Q9BU23 707 aaKnown RBP4.93□□□□□ -1.62
VPS41-209ENST00000457055 SPATC1LQ9H0A9 340 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 PRO3102Q9H379 93 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 ELOVL3Q9HB03 270 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 RAB9BQ9NP90 201 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 C1orf109Q9NX04 203 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 NXT1Q9UKK6 140 aaKnown RBP4.93□□□□□ -1.62
VPS41-209ENST00000457055 FOXJ3Q9UPW0 622 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 CSDC2Q9Y534 153 aaKnown RBP4.93□□□□□ -1.62
VPS41-209ENST00000457055 CLIC4Q9Y696 253 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 PRUNE2Q8WUY3 3088 aa4.93□□□□□ -1.62
VPS41-209ENST00000457055 BCORQ6W2J9 1755 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 NPIPA5A0A0B4J1W7 369 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 TMEM89A2RUT3 159 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 NPIPA5E9PKD4 350 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 NPIPA3F8WFD2 350 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 I6L893 689 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 CDIPTO14735 213 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 DSCR3O14972 297 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 MAGEB4O15481 346 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 SRPX2O60687 465 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 POP7O75817 140 aaKnown RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 UTS2O95399 124 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 TXNDC12O95881 172 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ACTL6AO96019 429 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 CD5P06127 495 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 GRPP07492 148 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 RAB40ALP0C0E4 278 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 SPP1P10451 314 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 NCK1P16333 377 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 CALCRP30988 508 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 CFHR2P36980 270 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 SOX2P48431 317 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 RBP2P50120 134 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 DUSP3P51452 185 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 CLDN18P56856 261 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 CDC42P60953 191 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 GUCY2DQ02846 1103 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 EGR4Q05215 589 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 PJVKQ0ZLH3 352 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 FUT7Q11130 342 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 GANABQ14697 944 aaKnown RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 NPY5RQ15761 445 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 EFNB3Q15768 340 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 GRK1Q15835 563 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ATP6AP1Q15904 470 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 KCTD19Q17RG1 926 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 RFX4Q33E94 735 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ZBED5Q49AG3 693 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 C19orf54Q5BKX5 351 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 OR2B11Q5JQS5 317 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 SLC35D3Q5M8T2 416 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 FAM102AQ5T9C2 384 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 SLC22A10Q63ZE4 541 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 OR2A2Q6IF42 318 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 FAM45BPQ6NSW5 357 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ACSM5Q6NUN0 579 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 RWDD4Q6NW29 188 aaKnown RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 LPCAT3Q6P1A2 487 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 RHBDF2Q6PJF5 856 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 DNM1P34Q6PK57 102 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ENPP7Q6UWV6 458 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 FAM159AQ6UWV7 190 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 HACD2Q6Y1H2 254 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 DPY19L2P2Q6ZN68 376 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 DPY19L3Q6ZPD9 716 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 FCRLAQ7L513 359 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 TRMT1LQ7Z2T5 733 aaKnown RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 FAM220AQ7Z4H9 259 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 TMEM144Q7Z5S9 345 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 TMEM135Q86UB9 458 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ADIPOR2Q86V24 386 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ZNF34Q8IZ26 560 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 SYS1Q8N2H4 156 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 C12orf76Q8N812 135 aaPredicted RBP4.92□□□□□ -1.62
VPS41-209ENST00000457055 ENGASEQ8NFI3 743 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 OR52H1Q8NGJ2 320 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ZFP28Q8NHY6 868 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 NAT6Q93015 286 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 PIGTQ969N2 578 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 PTH2Q96A98 100 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 CAPZA3Q96KX2 299 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 SPATA33Q96N06 139 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ZFP3Q96NJ6 502 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ERGIC2Q96RQ1 377 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 MAP1LC3CQ9BXW4 147 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ELOVL4Q9GZR5 314 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 NT5DC2Q9H857 520 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 IL1RL2Q9HB29 575 aa4.92□□□□□ -1.62
VPS41-209ENST00000457055 ANKHQ9HCJ1 492 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms