RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 NEK6Q9HC98 313 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 RASD1Q9Y272 281 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 CLCA3PQ9Y6N3 262 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 PIAS2O75928 621 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 DDAH2O95865 285 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 FAM157BP0CG42 384 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 RBMS1P29558 406 aaKnown RBP13.76□□□□□ -0.21
LDLR-202ENST00000455727 OR1D4P47884 311 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 SLC25A1P53007 311 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 HCCSP53701 268 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 ERVK-25P63136 954 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 UBXN2BQ14CS0 331 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 ELAVL1Q15717 326 aaKnown RBP13.76□□□□□ -0.21
LDLR-202ENST00000455727 ATAD3CQ5T2N8 411 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 PLET1Q6UQ28 207 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 APOOLQ6UXV4 268 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 ZNF721Q8TF20 911 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 SNX33Q8WV41 574 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 PHYHIPQ92561 330 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 ST6GAL2Q96JF0 529 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 YIPF2Q9BWQ6 316 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 UCKL1Q9NWZ5 548 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 SEMA5BQ9P283 1151 aa13.76□□□□□ -0.21
LDLR-202ENST00000455727 TP53BP1Q12888 1972 aaPredicted RBP13.76□□□□□ -0.21
LDLR-202ENST00000455727 EML5Q05BV3 1969 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 IGHV1OR21-1A0A087WYE8 117 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 LYRM1O43325 122 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 OIP5O43482 229 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 NUDT21O43809 227 aaKnown RBP13.75□□□□□ -0.21
LDLR-202ENST00000455727 ARL6IP5O75915 188 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 GLCEO94923 617 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 CD14P08571 375 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 RAB3BP20337 219 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 ALAS2P22557 587 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 HLA-DMAP28067 261 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 SLC6A8P48029 635 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 GDI2P50395 445 aaKnown RBP13.75□□□□□ -0.21
LDLR-202ENST00000455727 MADCAM1Q13477 382 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 CBLN3Q6UW01 205 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 FAM122BQ7Z309 247 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 PLXDC1Q8IUK5 500 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 LRRC75AQ8NAA5 344 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 GATSQ8NAP1 163 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 OR51L1Q8NGJ5 315 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 MOSPD2Q8NHP6 518 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 ZNRF4Q8WWF5 429 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 ZNF486Q96H40 463 aaPredicted RBP13.75□□□□□ -0.21
LDLR-202ENST00000455727 HSPA12BQ96MM6 686 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 OR8D2Q9GZM6 311 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 LAT2Q9GZY6 243 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 MMP25Q9NPA2 562 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 NANSQ9NR45 359 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 NCDNQ9UBB6 729 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 TCRBV16S1A1N1A0A5B0 115 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 GPRIN2O60269 458 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 SDC3O75056 442 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 TXNDC12O95881 172 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 ASAH2BP0C7U1 165 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 NAA10P41227 235 aaPredicted RBP13.75□□□□□ -0.21
LDLR-202ENST00000455727 ARL4DP49703 201 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 OR10A3P58181 314 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 D2HGDHQ8N465 521 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 SAMD12Q8N8I0 201 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 RPS4Y2Q8TD47 263 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 RASD2Q96D21 266 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 CLIP3Q96DZ5 547 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 ADAM19Q9H013 955 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 KLHL1Q9NR64 748 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 MOKQ9UQ07 419 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 SPAG17Q6Q759 2223 aa13.75□□□□□ -0.21
LDLR-202ENST00000455727 ABCA7Q8IZY2 2146 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 SEC16AO15027 2179 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 A0A0G2JMP0 313 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 A0A0X1KG70 313 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 ANKRD61A6NGH8 418 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 PRKNO60260 465 aaPredicted RBP13.74□□□□□ -0.21
LDLR-202ENST00000455727 UCHL1P09936 223 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 MST1P26927 711 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 PITPNBP48739 271 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 INPP1P49441 399 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 OR1D5P58170 312 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 RPS11P62280 158 aaKnown RBP eCLIP13.74□□□□□ -0.21
LDLR-202ENST00000455727 EGR4Q05215 589 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 SMAD2Q15796 467 aaKnown RBP13.74□□□□□ -0.21
LDLR-202ENST00000455727 BCL2A1Q16548 175 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 EMC4Q5J8M3 183 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 LINC01590Q5TEZ4 76 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 TMEM53Q6P2H8 277 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 UNQ9370/PRO34162Q6UXP9 181 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 OR4M2Q8NGB6 313 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 OR4M1Q8NGD0 313 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 SLC7A6Q92536 515 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 TSLPQ969D9 159 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 TP53INP1Q96A56 240 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 SNX18Q96RF0 628 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 ABRACLQ9P1F3 81 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 N6AMT1Q9Y5N5 214 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 TRBV2A0A0J9YWF9 115 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 A0A1W2PRG6 482 aa13.74□□□□□ -0.21
LDLR-202ENST00000455727 NOTOA8MTQ0 251 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms