RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TMEM171Q8WVE6 324 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 TMEM45BQ96B21 275 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 PERPQ96FX8 193 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 ANKRD27Q96NW4 1050 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 RSPO3Q9BXY4 272 aaPredicted RBP18.71■□□□□ 0.59
HMGB3-205ENST00000455596 PIF1Q9H611 641 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 C12orf10Q9HB07 376 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 ANGPT4Q9Y264 503 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 ARID1AO14497 2285 aa18.71■□□□□ 0.59
HMGB3-205ENST00000455596 TMCC2O75069 709 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 SERPINB7O75635 380 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 BSPH1Q075Z2 132 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 ADRM1Q16186 407 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 C6orf89Q6UWU4 347 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 GPAT4Q86UL3 456 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 RETREG3Q86VR2 466 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 LSMEM1Q8N8F7 131 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 OR52E4Q8NGH9 312 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 IGFBPL1Q8WX77 278 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 FBXW5Q969U6 566 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 CGREF1Q99674 301 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 TMEM120AQ9BXJ8 343 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 SLC7A10Q9NS82 523 aa18.7■□□□□ 0.58
HMGB3-205ENST00000455596 DPRXA6NFQ7 191 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 TPST1O60507 370 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 VAMP5O95183 116 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 ITGA5P08648 1049 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 TROVE2P10155 538 aaKnown RBP eCLIP18.69■□□□□ 0.58
HMGB3-205ENST00000455596 AQP1P29972 269 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 NCALDP61601 193 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 NFYCQ13952 458 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 GLIPR1L2Q4G1C9 344 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 TSPO2Q5TGU0 170 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 OR7E24Q6IFN5 339 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 PRSS57Q6UWY2 283 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 AAED1Q7RTV5 226 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 COMTD1Q86VU5 262 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 ARMC8Q8IUR7 673 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 C11orf65Q8NCR3 313 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 LILRB1Q8NHL6 650 aaPredicted RBP18.69■□□□□ 0.58
HMGB3-205ENST00000455596 MFSD8Q8NHS3 518 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 ZNF385AQ96PM9 386 aaKnown RBP18.69■□□□□ 0.58
HMGB3-205ENST00000455596 GSX2Q9BZM3 304 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 CXorf56Q9H5V9 222 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 TESQ9UGI8 421 aaKnown RBP18.69■□□□□ 0.58
HMGB3-205ENST00000455596 SLC13A4Q9UKG4 626 aa18.69■□□□□ 0.58
HMGB3-205ENST00000455596 ROS1P08922 2347 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 PDLIM1O00151 329 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 HTR2AP28223 471 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 GTF2E2P29084 291 aaKnown RBP18.68■□□□□ 0.58
HMGB3-205ENST00000455596 RPS5P46782 204 aaKnown RBP18.68■□□□□ 0.58
HMGB3-205ENST00000455596 PTH2RP49190 550 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 P2RY4P51582 365 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 MTPNP58546 118 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 EGR4Q05215 589 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 RBBP4Q09028 425 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 GABRA6Q16445 453 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 CYP51A1Q16850 503 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 ZNF672Q499Z4 452 aaPredicted RBP18.68■□□□□ 0.58
HMGB3-205ENST00000455596 ALG10BQ5I7T1 473 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 C5orf46Q6UWT4 87 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 PTOV1Q86YD1 416 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 KBTBD8Q8NFY9 601 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 OR52N5Q8NH56 324 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 DNAJA4Q8WW22 397 aaPredicted RBP18.68■□□□□ 0.58
HMGB3-205ENST00000455596 SLC25A36Q96CQ1 311 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 MUS81Q96NY9 551 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 TRIM2Q9C040 744 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 EVA1AQ9H8M9 152 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 MRGBPQ9NV56 204 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 NPAP1Q9NZP6 1156 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 RASD1Q9Y272 281 aa18.68■□□□□ 0.58
HMGB3-205ENST00000455596 HEATR1Q9H583 2144 aaKnown RBP18.68■□□□□ 0.58
HMGB3-205ENST00000455596 A0A1B0GWA3 101 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 PNMTP11086 282 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 FOXG1P55316 489 aaPredicted RBP18.67■□□□□ 0.58
HMGB3-205ENST00000455596 RGS8P57771 180 aaPredicted RBP18.67■□□□□ 0.58
HMGB3-205ENST00000455596 SELPLGQ14242 412 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 C9orf135Q5VTT2 229 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 ULK3Q6PHR2 472 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 YTHDF3Q7Z739 585 aaKnown RBP18.67■□□□□ 0.58
HMGB3-205ENST00000455596 ZIC4Q8N9L1 334 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 POMGNT2Q8NAT1 580 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 C1orf162Q8NEQ5 155 aaPredicted RBP18.67■□□□□ 0.58
HMGB3-205ENST00000455596 NEUROG1Q92886 237 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 SLC38A4Q969I6 547 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 KTI12Q96EK9 354 aaPredicted RBP18.67■□□□□ 0.58
HMGB3-205ENST00000455596 C18orf12Q96KH6 178 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 PTDSS2Q9BVG9 487 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 SLCO5A1Q9H2Y9 848 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 ZNF446Q9NWS9 450 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 SELENONQ9NZV5 590 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 LAMP3Q9UQV4 416 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 SLC25A15Q9Y619 301 aa18.67■□□□□ 0.58
HMGB3-205ENST00000455596 FTCDNL1E5RQL4 147 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 OR2T1O43869 369 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 MFN2O95140 757 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 PAX1P15863 534 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 ARFIP2P53365 341 aa18.66■□□□□ 0.58
HMGB3-205ENST00000455596 PCBP3P57721 371 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms