RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TIMP3P35625 211 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CHI3L1P36222 383 aaPredicted RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 CCNG1P51959 295 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 PAX9P55771 341 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 RPL27P61353 136 aaKnown RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 NAAAQ02083 359 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 KDSRQ06136 332 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 MGAT3Q09327 533 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 IL24Q13007 206 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 RCN1Q15293 331 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 UPP1Q16831 310 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 HKDC1Q2TB90 917 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CCDC153Q494R4 210 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 DNAL1Q4LDG9 190 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ACSBG2Q5FVE4 666 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 TCHHL1Q5QJ38 904 aaPredicted RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 MFSD14CQ5VZR4 134 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CST9Q5W186 159 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 PDPK2PQ6A1A2 396 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 STEAP1BQ6NZ63 245 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 TMEM135Q86UB9 458 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 MYPOPQ86VE0 399 aaPredicted RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 KCNMB4Q86W47 210 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ATPAF2Q8N5M1 289 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 GVQW1Q8N7I0 195 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 STEAP2Q8NFT2 490 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 OR5AP2Q8NGF4 316 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 OR5M9Q8NGP3 310 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 DTX3LQ8TDB6 740 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 STMN2Q93045 179 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 TSNARE1Q96NA8 513 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 VAT1Q99536 393 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ACBD6Q9BR61 282 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 SIKE1Q9BRV8 207 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 THTPAQ9BU02 230 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 TRIM62Q9BVG3 475 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 IL22Q9GZX6 179 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 FAM96AQ9H5X1 160 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CAB39LQ9H9S4 337 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CSNK1G1Q9HCP0 422 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 DMAP1Q9NPF5 467 aaPredicted RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 CHRAC1Q9NRG0 131 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 TAS2R1Q9NYW7 299 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 KLK11Q9UBX7 282 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 OR12D3Q9UGF7 316 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ADAM28Q9UKQ2 775 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 FZR1Q9UM11 496 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 RNF215Q9Y6U7 377 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ANK1P16157 1881 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 PLXNA1Q9UIW2 1896 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 A0A1W2PR80 420 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RNF222A6NCQ9 220 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 OR5H15A6NDH6 313 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 TMEM114B3SHH9 223 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 G3V2L1 256 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 NVLO15381 856 aaKnown RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 NUDT21O43809 227 aaKnown RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 TM7SF2O76062 418 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 KLHL2O95198 593 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PSMG1O95456 288 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 HLA-DQB2P05538 268 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 C2P06681 752 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 OR4Q2P0C623 313 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 SLC35G4P0C7Q5 338 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 CYBAP13498 195 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 AOC1P19801 751 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 NCF2P19878 526 aaPredicted RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 CCNCP24863 283 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 CCR1P32246 355 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 GPR183P32249 361 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 TRIM23P36406 574 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ID1P41134 155 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 MAGEA12P43365 314 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 DHPSP49366 369 aaPredicted RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 ERFP50548 548 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 SGSHP51688 502 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RAP1GDS1P52306 607 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PPIAP62937 165 aaKnown RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 CDH17Q12864 832 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 HNRNPDQ14103 355 aaKnown RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 POU6F1Q14863 301 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 TATDN3Q17R31 274 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ACSF3Q4G176 576 aaPredicted RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 BRMS1LQ5PSV4 323 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RABGAP1LQ5R372 815 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 SDHAF4Q5VUM1 108 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 C1orf146Q5VVC0 180 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 CD300LGQ6UXG3 332 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ZYG11AQ6WRX3 759 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 LRRC74BQ6ZQY2 392 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 NET1Q7Z628 596 aaPredicted RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 LINC00523Q86TU6 105 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 SERINC5Q86VE9 423 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 OR4N5Q8IXE1 308 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ZNF679Q8IYX0 411 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 CENPSQ8N2Z9 138 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RAB42Q8N4Z0 105 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ZNF781Q8N8C0 355 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ICA1LQ8NDH6 482 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms