RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MAPK14Q16539 360 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 CARTPTQ16568 116 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 TMEM249Q2WGJ8 235 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 SPANXN4Q5MJ08 99 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 C1QTNF12Q5T7M4 302 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 SAXO2Q658L1 398 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 TYW3Q6IPR3 259 aaKnown RBP6.82□□□□□ -1.32
VPS50-204ENST00000438395 FDX2Q6P4F2 183 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 FRRS1Q6ZNA5 592 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 RNF130Q86XS8 419 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 HIPK1Q86Z02 1210 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 ZDHHC13Q8IUH4 622 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 CCDC103Q8IW40 242 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 PEX5LQ8IYB4 626 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 ZNF781Q8N8C0 355 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 POMGNT2Q8NAT1 580 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 FAM71CQ8NEG0 241 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 WDR60Q8WVS4 1066 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 ZNF75CPQ92670 426 aaPredicted RBP6.82□□□□□ -1.32
VPS50-204ENST00000438395 ARL5BQ96KC2 179 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 TRNT1Q96Q11 434 aaKnown RBP6.82□□□□□ -1.32
VPS50-204ENST00000438395 INPP5KQ9BT40 448 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 TAPBPLQ9BX59 468 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 C1QTNF6Q9BXI9 259 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 BEX2Q9BXY8 128 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 NUF2Q9BZD4 464 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 ARMC7Q9H6L4 198 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 LPAR3Q9UBY5 353 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 KCNE5Q9UJ90 142 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 DCTN4Q9UJW0 460 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 TRAPPC4Q9Y296 219 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.82□□□□□ -1.32
VPS50-204ENST00000438395 SLC25A15Q9Y619 301 aa6.82□□□□□ -1.32
VPS50-204ENST00000438395 GOLGA8QA0A0J9YX86 632 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 LOC100289279A0A1B0GTE1 492 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 GOLGA8OA6NCC3 632 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CCDC154A6NI56 674 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 AGAP5A6NIR3 686 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CLDN24A6NM45 220 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 E7EQL1 145 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ZNF587BE7ETH6 402 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 GOLGA8NF8WBI6 632 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 H7C417 338 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ZNF208O43345 1280 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 TYROBPO43914 113 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ANP32DO95626 131 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 KRT75O95678 551 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CD8AP01732 235 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 DBIP07108 87 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 ERCC1P07992 297 aaPredicted RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 ITGA5P08648 1049 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 FAM157CP0CG43 387 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 NCF2P19878 526 aaPredicted RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 USF1P22415 310 aaPredicted RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 GTF2E2P29084 291 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 MPGP29372 298 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ARRB2P32121 409 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 SLC1A3P43003 542 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 SLC1A6P48664 564 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 EFNA4P52798 201 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 NME5P56597 212 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 UBE2NP61088 152 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 VSNL1P62760 191 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 IRX1P78414 480 aaPredicted RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 STX3Q13277 289 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 LARS2Q15031 903 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 LIN52Q52LA3 116 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 OTUD3Q5T2D3 398 aaPredicted RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 C6orf52Q5T4I8 152 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 MRPL2Q5T653 305 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 HHATQ5VTY9 493 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 PAQR6Q6TCH4 344 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ZNF621Q6ZSS3 439 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 AAED1Q7RTV5 226 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 SLC46A3Q7Z3Q1 461 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 GPAT4Q86UL3 456 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 LRRC34Q8IZ02 419 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CADM2Q8N3J6 435 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ZNF525Q8N782 197 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 OR52E4Q8NGH9 312 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CNOT9Q92600 299 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 HTRA1Q92743 480 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ZNF524Q96C55 264 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CCDC115Q96NT0 180 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 OR52E6Q96RD3 313 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 TNFRSF13CQ96RJ3 184 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 PAIP2Q9BPZ3 127 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 SHARPINQ9H0F6 387 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 MANSC1Q9H8J5 431 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 MTHFD2LQ9H903 347 aaPredicted RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 MOV10Q9HCE1 1003 aaKnown RBP6.81□□□□□ -1.32
VPS50-204ENST00000438395 KCNK9Q9NPC2 374 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 SLC17A5Q9NRA2 495 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 ADPRHL2Q9NX46 363 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 CALML5Q9NZT1 146 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 P2RX2Q9UBL9 471 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 OSGIN1Q9UJX0 560 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 FLVCR1Q9Y5Y0 555 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 RTTNQ86VV8 2226 aa6.81□□□□□ -1.32
VPS50-204ENST00000438395 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms