RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CCDC154A6NI56 674 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 AGAP5A6NIR3 686 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 AQP7P3A6NL99 342 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 ZNF208O43345 1280 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 DNPH1O43598 174 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 EIF1BO60739 113 aaKnown RBP7.03□□□□□ -1.28
VIM-202ENST00000421459 LILRA1O75019 489 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 KRT33AO76009 404 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 STAMBPO95630 424 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 WNT11O96014 354 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 CECR9P0C854 216 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 BMP4P12644 408 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 ZNF23P17027 643 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 THBS2P35442 1172 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 THBS4P35443 961 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 KHKP50053 298 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 UFM1P61960 85 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 SNRPD2P62316 118 aaKnown RBP7.03□□□□□ -1.28
VIM-202ENST00000421459 NAAAQ02083 359 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 TGFBR3Q03167 851 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 EPS8Q12929 822 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 CCNIQ14094 377 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 MRPL2Q5T653 305 aaKnown RBP7.03□□□□□ -1.28
VIM-202ENST00000421459 NIPAL3Q6P499 406 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 PAQR6Q6TCH4 344 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 KLHL24Q6TFL4 600 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 CREB3L2Q70SY1 520 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 CARM1Q86X55 608 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 EPHX4Q8IUS5 362 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 CADM2Q8N3J6 435 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 SVOPLQ8N434 492 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.03□□□□□ -1.28
VIM-202ENST00000421459 TMEM45BQ96B21 275 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 ZNF837Q96EG3 531 aaPredicted RBP7.03□□□□□ -1.28
VIM-202ENST00000421459 SNX18Q96RF0 628 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 NELFAQ9H3P2 528 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 POLE3Q9NRF9 147 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 TMEM45AQ9NWC5 275 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 ADPRHL2Q9NX46 363 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 ASIC5Q9NY37 505 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 CFAP73A6NFT4 308 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 TMEM229AB2RXF0 380 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 B9A039 149 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 hCG_2039718K7EN88 272 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 NDUFS8O00217 210 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 TYROBPO43914 113 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 RGS9O75916 674 aaPredicted RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 SEC14L2O76054 403 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 AGR2O95994 175 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 GPIP06744 558 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 GUSBP08236 651 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 ALDOCP09972 364 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 DAOP14920 347 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 IL7RP16871 459 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 RPS4Y1P22090 263 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 CXCR1P25024 350 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 ACAA2P42765 397 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 ETV4P43268 484 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 HTR3AP46098 478 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 IDH3GP51553 393 aaPredicted RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 ABCE1P61221 599 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 HPCAP84074 193 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 ARF1P84077 181 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 HOXC5Q00444 222 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 MAD2L1Q13257 205 aaPredicted RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 CHI3L2Q15782 390 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 ZSWIM7Q19AV6 140 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 MSMPQ1L6U9 139 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 FAM174BQ3ZCQ3 159 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 RPS26P11Q5JNZ5 115 aaPredicted RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 ANXA8L1Q5VT79 327 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 TMEM225Q6GV28 225 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 ZNF836Q6ZNA1 936 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 ZNF621Q6ZSS3 439 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 SPATA21Q7Z572 469 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 NUDCD3Q8IVD9 361 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 CDK20Q8IZL9 346 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 CNPY4Q8N129 248 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 CLIP4Q8N3C7 705 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 WDR60Q8WVS4 1066 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 PMM1Q92871 262 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 TRNT1Q96Q11 434 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 DOK1Q99704 481 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 KATNB1Q9BVA0 655 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 NUF2Q9BZD4 464 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 TPK1Q9H3S4 243 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 PLK3Q9H4B4 646 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 NARFLQ9H6Q4 476 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 MTHFD2LQ9H903 347 aaPredicted RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 PPCSQ9HAB8 311 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 SLC6A13Q9NSD5 602 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 PNPOQ9NVS9 261 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 LGALS13Q9UHV8 139 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 CHST2Q9Y4C5 530 aa7.02□□□□□ -1.29
VIM-202ENST00000421459 YLPM1P49750 1951 aaKnown RBP7.02□□□□□ -1.29
VIM-202ENST00000421459 ZNF587BE7ETH6 402 aa7.01□□□□□ -1.29
VIM-202ENST00000421459 WNT9BO14905 357 aa7.01□□□□□ -1.29
VIM-202ENST00000421459 WIPF1O43516 503 aa7.01□□□□□ -1.29
VIM-202ENST00000421459 FRS3O43559 492 aa7.01□□□□□ -1.29
VIM-202ENST00000421459 VENTXO95231 258 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms