RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TP53I3Q53FA7 332 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ZMAT1Q5H9K5 638 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM31Q5JXX7 168 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FBXW12Q6X9E4 464 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM184AQ6ZMB5 413 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF551Q7Z340 670 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 MMP21Q8N119 569 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 OR5M3Q8NGP4 307 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CPT1CQ8TCG5 803 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 C4orf36Q96KX1 117 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 IP6K3Q96PC2 410 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 NECAP2Q9NVZ3 263 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CA5BQ9Y2D0 317 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 AKAP12Q02952 1782 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PLSCR5A0PG75 271 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GLOD5A6NK44 160 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CEBPZOSA8MTT3 80 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SDC3O75056 442 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 KNG1P01042 644 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GIFP27352 417 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 FAPQ12884 760 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PLA1AQ53H76 456 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 LRRC73Q5JTD7 316 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 ENTPD8Q5MY95 495 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CTSL3PQ5NE16 218 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TMPRSS7Q7RTY8 843 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 KANSL1Q7Z3B3 1105 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CPNE4Q96A23 557 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 KIRREL1Q96J84 757 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SLC29A1Q99808 456 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 PIGQQ9BRB3 760 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SIDT1Q9NXL6 827 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 DNAJB11Q9UBS4 358 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 AK6Q9Y3D8 172 aaKnown RBP5.69□□□□□ -1.5
SCN1A-203ENST00000409050 GABRR3A8MPY1 467 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PPP1R2P9O14990 202 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 LAMTOR5O43504 91 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SGCEO43556 437 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GJB5O95377 273 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 DRD5P21918 477 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PTPN6P29350 595 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 C17orf67Q0P5P2 114 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 DGKZQ13574 1117 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 AGBL4Q5VU57 503 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 FCRL6Q6DN72 434 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 UQCC3Q6UW78 93 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 DPPA2Q7Z7J5 298 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 C1orf87Q8N0U7 546 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 LNX2Q8N448 690 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 OR1S2Q8NGQ3 325 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 OR6K3Q8NGY3 331 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 BCL7CQ8WUZ0 217 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GIMAP1Q8WWP7 306 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 RAB3CQ96E17 227 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PPP1R14DQ9NXH3 145 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 EHFQ9NZC4 300 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GNG13Q9P2W3 67 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 BAZ2BQ9UIF8 2168 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 E5RGE8 158 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 I6L893 689 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 C1orf105O95561 183 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 CER1O95813 267 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 IQCF3P0C7M6 154 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GDNFP39905 211 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 MGAT3Q09327 533 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 NFATC4Q14934 902 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SFXN4Q6P4A7 337 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 KDF1Q8NAX2 398 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 CPEB3Q8NE35 698 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 OR9Q2Q8NGE9 314 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 OR5K2Q8NHB8 316 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 RBPMSQ93062 196 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TOMM40LQ969M1 308 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 C10orf90Q96M02 699 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 CDCA4Q9BXL8 241 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PLEKHF2Q9H8W4 249 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 KCNK12Q9HB15 430 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ZBTB20Q9HC78 741 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SLC39A9Q9NUM3 307 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 POU2F3Q9UKI9 436 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 NDRG4Q9ULP0 352 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 OR6C76A6NM76 312 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ABHD16AO95870 558 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 WNT11O96014 354 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TCRBP04435 133 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TFPTP0C1Z6 253 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ZDHHC11BP0C7U3 371 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SLC35E2P0CK97 266 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TACR1P25103 407 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 UBE2MP61081 183 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 DHODHQ02127 395 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PIN1Q13526 163 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 MCATQ8IVS2 390 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 IL22RA1Q8N6P7 574 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM102Q8N9M5 508 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ZMYND19Q96E35 227 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF75AQ96N20 296 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 CIB3Q96Q77 187 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 OR2A14Q96R47 310 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 LMF1Q96S06 567 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms