RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GPA33Q99795 319 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 PTDSS2Q9BVG9 487 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 ASPNQ9BXN1 380 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 FKRPQ9H9S5 495 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 USE1Q9NZ43 259 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 SPRR3Q9UBC9 169 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 TRAPPC4Q9Y296 219 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 POFUT2Q9Y2G5 429 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 CACNA1BQ00975 2339 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 MPDZO75970 2070 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 TLN1Q9Y490 2541 aaKnown RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 DNAJC13O75165 2243 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 A0A1B0GTH9 108 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 A0A1B0GVC2 190 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 LIPT2A6NK58 231 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 H0YC42 278 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 AQP7O14520 342 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 CDC42EP2O14613 210 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 MITFO75030 526 aaPredicted RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 HPRP00739 348 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 ALPLP05186 524 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 ZNF708P17019 499 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 GRPRP30550 384 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 VHLP40337 213 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 EIF1AXP47813 144 aaKnown RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 DIO1P49895 249 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 RAD23AP54725 363 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 TPD52P55327 224 aaPredicted RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 CARD18P57730 90 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 RPS3AP61247 264 aaKnown RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 CSNK2A1P68400 391 aaPredicted RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 HSF1Q00613 529 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 LTBQ06643 244 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 C19orf57Q0VDD7 668 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 COX10Q12887 443 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 TAF11Q15544 211 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 BCL2A1Q16548 175 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 SGCBQ16585 318 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 ARHGAP11AQ6P4F7 1023 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 CHMP1BQ7LBR1 199 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 SLC46A3Q7Z3Q1 461 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 GGNQ86UU5 652 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 LRRC17Q8N6Y2 441 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 OR13C2Q8NGS9 318 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 OR51A7Q8NH64 312 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 OSTF1Q92882 214 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 MIB2Q96AX9 1013 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 SARAFQ96BY9 339 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 ZNF229Q9UJW7 825 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 CAMK2AQ9UQM7 478 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 USP24Q9UPU5 2620 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 NPIPA2E9PIF3 369 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 NPIPA3F8WFD2 350 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 PMS2P2O95744 297 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 ZNF26P17031 533 aaPredicted RBP16.23■□□□□ 0.19
SDC1-203ENST00000403076 CDH2P19022 906 aaPredicted RBP16.23■□□□□ 0.19
SDC1-203ENST00000403076 SLC9A3P48764 834 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 CLDN15P56746 228 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 CLDN18P56856 261 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 SLC35A1P78382 337 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 PMS2P3Q13401 168 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 KLHL17Q6TDP4 642 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 NANOGNBQ7Z5D8 188 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 TIGARQ9NQ88 270 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 PLSCR2Q9NRY7 297 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 ASF1BQ9NVP2 202 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 TMEFF2Q9UIK5 374 aaPredicted RBP16.23■□□□□ 0.19
SDC1-203ENST00000403076 CORINQ9Y5Q5 1042 aa16.23■□□□□ 0.19
SDC1-203ENST00000403076 TRAV27A0A087WT01 109 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 FTCDNL1E5RQL4 147 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 BLOC1S5-TXNDC5H3BN57 136 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 KLF4O43474 513 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 CXCL13O43927 109 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 OR6A2O95222 327 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 POU1F1P28069 291 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 NFATC3Q12968 1075 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 C3AR1Q16581 482 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 RFX4Q33E94 735 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 ZBED5Q49AG3 693 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 PRR30Q53SZ7 412 aaPredicted RBP16.22■□□□□ 0.19
SDC1-203ENST00000403076 ZNF324BQ6AW86 544 aaPredicted RBP16.22■□□□□ 0.19
SDC1-203ENST00000403076 CD300LDQ6UXZ3 194 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 OR10D3Q8NH80 312 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 LIPHQ8WWY8 451 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 ZHX1-C8orf76Q96EF9 292 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 TNFRSF13CQ96RJ3 184 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 RIBC2Q9H4K1 309 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 ALKBH4Q9NXW9 302 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 ENOPH1Q9UHY7 261 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 SPTA1P02549 2419 aa16.22■□□□□ 0.19
SDC1-203ENST00000403076 H3BN98 237 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 M0R082 166 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 AKR7A3O95154 331 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 SOX14O95416 240 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 ASAH2BP0C7U1 165 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 CTU2Q2VPK5 515 aaKnown RBP16.21■□□□□ 0.19
SDC1-203ENST00000403076 ZIK1Q3SY52 487 aaPredicted RBP16.21■□□□□ 0.19
SDC1-203ENST00000403076 WLSQ5T9L3 541 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 RASSF6Q6ZTQ3 369 aa16.21■□□□□ 0.19
SDC1-203ENST00000403076 OR5J2Q8NH18 312 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms