RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 URB1O60287 2271 aaKnown RBP6.26□□□□□ -1.41
LIMA1-202ENST00000394943 AHCTF1Q8WYP5 2266 aa6.26□□□□□ -1.41
LIMA1-202ENST00000394943 FAM221AA4D161 298 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 OR6C65A6NJZ3 312 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 FIGNL2A6NMB9 653 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 ARPC3O15145 178 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 RRP9O43818 475 aaKnown RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 ADAP00813 363 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 FUT4P22083 530 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 DNAJA1P31689 397 aaKnown RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 KDM4DQ6B0I6 523 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 TTC33Q6PID6 262 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 EPHX4Q8IUS5 362 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 INTS12Q96CB8 462 aaKnown RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 KTI12Q96EK9 354 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 OXGR1Q96P68 337 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 CHID1Q9BWS9 393 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 CHST11Q9NPF2 352 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 MGAT4BQ9UQ53 548 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 SIGLEC7Q9Y286 467 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 ZC3H12DA2A288 527 aaKnown RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 NPIPA5E9PKD4 350 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 G3V3Y1 287 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 TRAF3IP2O43734 574 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 PEX19P40855 299 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 KIR2DL2P43627 348 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 OR3A2P47893 321 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 COPZ1P61923 177 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 PPP2R2BQ00005 443 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 LRRC23Q53EV4 343 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 C10orf128Q5T292 105 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 ARMC4Q5T2S8 1044 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 PODNL1Q6PEZ8 512 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 GFRALQ6UXV0 394 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 PACRGLQ8N7B6 248 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 GATSQ8NAP1 163 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 C1orf162Q8NEQ5 155 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 OR5J2Q8NH18 312 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 GNPDA2Q8TDQ7 276 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 ARL5BQ96KC2 179 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 RDH12Q96NR8 316 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 NAA11Q9BSU3 229 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 DEFB127Q9H1M4 99 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 MCCC2Q9HCC0 563 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 VSX1Q9NZR4 365 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-202ENST00000394943 NPIPA1Q9UND3 350 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 IGF2RP11717 2491 aa6.25□□□□□ -1.41
LIMA1-202ENST00000394943 ARPC4-TTLL3A0A0A6YYG9 625 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF814B7Z6K7 855 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 J3KTA2 159 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CLOCKO15516 846 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ICMTO60725 284 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 HOXB1P14653 301 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CTSSP25774 331 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 AQP1P29972 269 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 AGTR1P30556 359 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 NUP107P57740 925 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MXRA7P84157 204 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 KCNMB1Q16558 191 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 HBMQ6B0K9 141 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 H1FNTQ75WM6 255 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MRGPRGQ86SM5 289 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 C9orf106Q8NAJ2 232 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 OR5K1Q8NHB7 308 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 FBLIM1Q8WUP2 373 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 TMEM255BQ8WV15 326 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 NRIP3Q9NQ35 241 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ELOVL5Q9NYP7 299 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 C6orf203Q9P0P8 240 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 SLC5A6Q9Y289 635 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 DOCK7Q96N67 2140 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 TRBV4-1A0A0J9YWV2 114 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 GMNNO75496 209 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MAKP20794 623 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CXCR1P25024 350 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 TEKQ02763 1124 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CHRNB3Q05901 458 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 PIN1Q13526 163 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 SEZ6L2Q6UXD5 910 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CREB3L2Q70SY1 520 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ZER1Q7Z7L7 766 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 TMEM179BQ7Z7N9 219 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 OR6X1Q8NH79 312 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ITLN2Q8WWU7 325 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ASB5Q8WWX0 329 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 STARD4Q96DR4 205 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 KLHL4Q9C0H6 718 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 RASSF4Q9H2L5 321 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MARCH7Q9H992 704 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 STX18Q9P2W9 335 aaKnown RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MALT1Q9UDY8 824 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 TMEFF2Q9UIK5 374 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 NOX1Q9Y5S8 564 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 FLVCR1Q9Y5Y0 555 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MAP1BP46821 2468 aaKnown RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MGAQ8IWI9 3026 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 GSTM3P21266 225 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 ENPP1P22413 925 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CARD18P57730 90 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CDK5Q00535 292 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms