RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLIRPQ9GZT3 109 aaKnown RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 HMG20AQ9NP66 347 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 KRCC1Q9NPI7 259 aaPredicted RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 SDHAF3Q9NRP4 125 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ERGIC3Q9Y282 383 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 LSM2Q9Y333 95 aaKnown RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 NBEAQ8NFP9 2946 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 CACNA1GO43497 2377 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 TRAPPC13A5PLN9 417 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 SNTNA6NMZ2 147 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 CLDN25C9JDP6 229 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 J3QRK9 145 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 PIP5K1CO60331 668 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ZNF354AO60765 605 aaPredicted RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 FMO6PO60774 539 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 KCNK2O95069 426 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 PRG2P13727 222 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 HTR2AP28223 471 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 GPR4P46093 362 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ZNF846Q147U1 533 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 TSTQ16762 297 aaKnown RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 HYAL4Q2M3T9 481 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 CLEC12AQ5QGZ9 265 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 USP43Q70EL4 1123 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 MISPQ8IVT2 679 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 AMER2Q8N7J2 671 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ZNF527Q8NB42 609 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ZFP62Q8NB50 900 aaPredicted RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 KBTBD8Q8NFY9 601 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 HGDQ93099 445 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 FRMD6Q96NE9 622 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 MND1Q9BWT6 205 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 WDR12Q9GZL7 423 aaKnown RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 RACGAP1Q9H0H5 632 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 OR51E2Q9H255 320 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ARMC7Q9H6L4 198 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 AKIP1Q9NQ31 210 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 UBQLN4Q9NRR5 601 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 ANKRD10Q9NXR5 420 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 CLEC2DQ9UHP7 191 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 DIMT1Q9UNQ2 313 aaKnown RBP9.27□□□□□ -0.93
VPS53-202ENST00000389040 CORINQ9Y5Q5 1042 aa9.27□□□□□ -0.93
VPS53-202ENST00000389040 LOC100506127A0A0U1RQW1 187 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 B8ZZF3 427 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 CCRL2O00421 344 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 PRODHO43272 600 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 RAB36O95755 333 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 SCG5P05408 212 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 GKN3PP0CG01 181 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TBXA2RP21731 343 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 CD97P48960 835 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 RNF144AP50876 292 aaPredicted RBP9.26□□□□□ -0.93
VPS53-202ENST00000389040 DOC2BQ14184 412 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 OR1Q1Q15612 314 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 ZSWIM7Q19AV6 140 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TIMM50Q3ZCQ8 353 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 FLYWCH1Q4VC44 716 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 ZNF620Q6ZNG0 422 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 MDGA2Q7Z553 956 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 ATCAYQ86WG3 371 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TMCO5AQ8N6Q1 288 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 OR10G3Q8NGC4 313 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 OR6Q1Q8NGQ2 317 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 S100ZQ8WXG8 99 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TMEM41AQ96HV5 264 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 OPALINQ96PE5 141 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 ADOQ96SZ5 270 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 PRSS27Q9BQR3 290 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TAPBPLQ9BX59 468 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TEX12Q9BXU0 123 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 QPCTLQ9NXS2 382 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 IL20Q9NYY1 176 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 TESQ9UGI8 421 aaKnown RBP9.26□□□□□ -0.93
VPS53-202ENST00000389040 BOKQ9UMX3 212 aaPredicted RBP9.26□□□□□ -0.93
VPS53-202ENST00000389040 CDH10Q9Y6N8 788 aa9.26□□□□□ -0.93
VPS53-202ENST00000389040 A0A1W2PQD3 144 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 IRGMA1A4Y4 181 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 IDUAP35475 653 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 CASP3P42574 277 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 RFX3P48380 749 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 FBXW4P57775 412 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 SPHARQ15513 63 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 KLHL22Q53GT1 634 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 SOWAHCQ53LP3 525 aaPredicted RBP9.25□□□□□ -0.93
VPS53-202ENST00000389040 GALNTL5Q7Z4T8 443 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 ZAR1Q86SH2 424 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 SULF2Q8IWU5 870 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 CLDN22Q8N7P3 220 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 NANOGP1Q8N7R0 232 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 Q8NA96 180 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 PROKR2Q8NFJ6 384 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 OR4N2Q8NGD1 307 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 OR52I1Q8NGK6 324 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 OR4Q3Q8NH05 313 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 CHCHD6Q9BRQ6 235 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 CENPOQ9BU64 300 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 EVA1AQ9H8M9 152 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 B4GALT7Q9UBV7 327 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 GPR52Q9Y2T5 361 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 MED13Q9UHV7 2174 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms