RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ZIC4Q8N9L1 334 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 OR52E4Q8NGH9 312 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 SMAP2Q8WU79 429 aaPredicted RBP19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 CKAP2Q8WWK9 683 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 MAGEB18Q96M61 343 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 TAPBPLQ9BX59 468 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 RSPO3Q9BXY4 272 aaPredicted RBP19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 AMBRA1Q9C0C7 1298 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 SLC25A15Q9Y619 301 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 NF1P21359 2839 aa19.1■□□□□ 0.65
CCDC28B-201ENST00000373602 TRIM64A6NGJ6 449 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 TRIM64BA6NI03 449 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 OVOL3O00110 214 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 P2RY4P51582 365 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 ATP5J2P56134 94 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 TSPO2Q5TGU0 170 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 C1orf140Q5VVS0 124 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 CLEC9AQ6UXN8 241 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 OR9K2Q8NGE7 335 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 OR52N5Q8NH56 324 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 NFKBIDQ8NI38 313 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 STK35Q8TDR2 534 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 SLC7A10Q9NS82 523 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 UPB1Q9UBR1 384 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 DCTN4Q9UJW0 460 aa19.09■□□□□ 0.65
CCDC28B-201ENST00000373602 A0A1W2PP18 115 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 FAM171A2A8MVW0 826 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 SHISA9B4DS77 424 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 H2AFXP16104 143 aaPredicted RBP19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 GPX2P18283 190 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 PRKAR1BP31321 381 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 HOXC5Q00444 222 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 CDK6Q00534 326 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 PGGHGQ32M88 737 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 REEP3Q6NUK4 255 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 ZNF385AQ96PM9 386 aaKnown RBP19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 RABEP2Q9H5N1 569 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 IKZF5Q9H5V7 419 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 ARGLU1Q9NWB6 273 aaPredicted RBP19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 ADPRHL2Q9NX46 363 aa19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 CISD1Q9NZ45 108 aaKnown RBP19.08■□□□□ 0.64
CCDC28B-201ENST00000373602 ABCD4O14678 606 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 VAMP5O95183 116 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 LTBQ06643 244 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 TMEM225Q6GV28 225 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 DHRS4L2Q6PKH6 230 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 DLEU7Q6UYE1 221 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 Q71RC1 249 aaPredicted RBP19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 AAED1Q7RTV5 226 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 GPAT4Q86UL3 456 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 C1orf162Q8NEQ5 155 aaPredicted RBP19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 RADILQ96JH8 1075 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 TMEM38AQ9H6F2 299 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 C12orf10Q9HB07 376 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 CORO2BQ9UQ03 480 aa19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 MAGED1Q9Y5V3 778 aaPredicted RBP19.07■□□□□ 0.64
CCDC28B-201ENST00000373602 A0A1W2PR80 420 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 FTCDNL1E5RQL4 147 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 AHSA1O95433 338 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 HEXAP06865 529 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 PTAFRP25105 342 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 MPGP29372 298 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 EGR4Q05215 589 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 C9orf135Q5VTT2 229 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 KLHL17Q6TDP4 642 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 C6orf89Q6UWU4 347 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 TMEM108Q6UXF1 575 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 COMTD1Q86VU5 262 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 KRT73Q86Y46 540 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 C17orf78Q8N4C9 275 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 LSMEM1Q8N8F7 131 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 WDR31Q8NA23 367 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 POMGNT2Q8NAT1 580 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 MFSD8Q8NHS3 518 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 TRMT61AQ96FX7 289 aaKnown RBP19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 PTDSS2Q9BVG9 487 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 SPATA5L1Q9BVQ7 753 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 SLCO5A1Q9H2Y9 848 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 MGAT4BQ9UQ53 548 aa19.06■□□□□ 0.64
CCDC28B-201ENST00000373602 EVPLLA8MZ36 301 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 TPST1O60507 370 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 LY6G6DO95868 133 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 CD40P25942 277 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 ZNF83P51522 516 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 CDH11P55287 796 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 TGFBR3Q03167 851 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 SCARB2Q14108 478 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 ADRM1Q16186 407 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 RUNDC3AQ59EK9 446 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 C1QTNF12Q5T7M4 302 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 CREB3L2Q70SY1 520 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 THOC1Q96FV9 657 aaKnown RBP19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 CPPED1Q9BRF8 314 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 TRAF4Q9BUZ4 470 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 GRIP2Q9C0E4 1043 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 ZNF385DQ9H6B1 395 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 SLC17A5Q9NRA2 495 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 RPS6KB2Q9UBS0 482 aa19.05■□□□□ 0.64
CCDC28B-201ENST00000373602 LEF1Q9UJU2 399 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms