RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 UNC119BA6NIH7 251 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FOXI3A8MTJ6 420 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 PRAMEF26H0Y7S4 382 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TXNDC9O14530 226 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PFDN6O15212 129 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 EMC8O43402 210 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CRCPO75575 148 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 UPK3AO75631 287 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SERPINB7O75635 380 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SEMA4FO95754 770 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 BGLAPP02818 100 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FHP07954 510 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CD63P08962 238 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C8orf89P0DMQ9 161 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CLUP10909 449 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF17P17021 662 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 IL10P22301 178 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PPIBP23284 216 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 NFKBIAP25963 317 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CRATP43155 626 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MAZP56270 477 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 RAB38P57729 211 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RPS15P62841 145 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 OLR1P78380 273 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SIM1P81133 766 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZFP36L1Q07352 338 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 TSPAN31Q12999 210 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PLA2G7Q13093 441 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CRMP1Q14194 572 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ICAM4Q14773 271 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NCF4Q15080 339 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RPS6KA2Q15349 733 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 BCL2A1Q16548 175 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RSPO1Q2MKA7 263 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF829Q3KNS6 432 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC36A2Q495M3 483 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CCNJQ5T5M9 372 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PRAMEF17Q5VTA0 474 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NIPAL3Q6P499 406 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TNFAIP8L2Q6P589 184 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 FIGLAQ6QHK4 219 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PTCHD4Q6ZW05 846 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PRSS45Q7RTY3 260 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ADCK2Q7Z695 626 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ASPGQ86U10 573 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C17orf64Q86WR6 236 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C8orf59Q8N0T1 100 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 CADM3Q8N126 398 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ARL14Q8N4G2 192 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 AQP11Q8NBQ7 271 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR4E2Q8NGC2 313 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR56A1Q8NGH5 318 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR1L3Q8NH93 324 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 BBS10Q8TAM1 723 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TMEM163Q8TC26 289 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 POC1BQ8TC44 478 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 GIPC3Q8TF64 312 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RAB2BQ8WUD1 216 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 KAT2AQ92830 837 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC38A4Q969I6 547 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SDCCAG3Q96C92 435 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PPCDCQ96CD2 204 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LCORQ96JN0 433 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 MS4A4EQ96PG1 132 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ATF6BQ99941 703 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 THUMPD3Q9BV44 507 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 SPRTNQ9H040 489 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 PCED1AQ9H1Q7 454 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC26A1Q9H2B4 701 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 VCX3BQ9H321 246 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RAD21L1Q9H4I0 556 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 POLR1BQ9H9Y6 1135 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TRIM36Q9NQ86 728 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HINT3Q9NQE9 182 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 EXOSC3Q9NQT5 275 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 MS4A12Q9NXJ0 267 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TAS2R5Q9NYW4 299 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 B3GAT1Q9P2W7 334 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SEC14L4Q9UDX3 406 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MUTYHQ9UIF7 546 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RPS6KA6Q9UK32 745 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 COPS3Q9UNS2 423 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 UNC13CQ8NB66 2214 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 A0A075B6Q4 140 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 IGKV1D-43A0A0B4J1Z2 117 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR6C74A6NCV1 312 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ANKRD61A6NGH8 418 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF860A6NHJ4 632 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF670-ZNF695F2Z2N8 137 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TNFRSF11BO00300 401 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM20BO75063 409 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 KLF7O75840 302 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 PIAS2O75928 621 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NSA2O95478 260 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 CPSF4O95639 269 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 CER1O95813 267 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ANGPTL1O95841 491 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 UMODP07911 640 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC35E2P0CK97 266 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms