RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 AQP2P41181 271 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 TXNL4AP83876 142 aaKnown RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 GK3PQ14409 553 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SYT14P1Q58G82 188 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 GRINAQ7Z429 371 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 BCDIN3DQ7Z5W3 292 aaKnown RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 SLC22A16Q86VW1 577 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 MDS2Q8NDY4 140 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 TNFRSF13CQ96RJ3 184 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 OLAHQ9NV23 265 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 UBAP1Q9NZ09 502 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 EXPH5Q8NEV8 1989 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 A0A087WV48 116 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ANKUB1A6NFN9 424 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 TRIM64CA6NLI5 447 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 EIF4E2O60573 245 aaKnown RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 RAMP1O60894 148 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 TFAP2AP05549 437 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 STSP08842 583 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 DAPP51397 102 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 MYBPHQ13203 477 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 TMED1Q13445 227 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 MELKQ14680 651 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 C9orf135Q5VTT2 229 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SYT14Q8NB59 555 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SAMD8Q96LT4 415 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 PRSS27Q9BQR3 290 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ZNF703Q9H7S9 590 aaPredicted RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 RHBDL2Q9NX52 303 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 LHX6Q9UPM6 363 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 A0A1W2PQ72 361 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 SH3PXD2BA1X283 911 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 TRIM64A6NGJ6 449 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 FAM183AA6NL82 134 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 EFCAB9A8MZ26 197 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 KDM4EB2RXH2 506 aaPredicted RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 M0R082 166 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 CHP2O43745 196 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 HIST1H2ABP04908 130 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 SLC6A8P48029 635 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 POLR2HP52434 150 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 MICAQ29983 383 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 LINC00303Q3SY05 128 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 TMEM225Q6GV28 225 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 FAM180AQ6UWF9 173 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 HIST3H2AQ7L7L0 130 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 NANOGNBQ7Z5D8 188 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 TMEM99Q8N816 258 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 OR5K1Q8NHB7 308 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 ZNF417Q8TAU3 575 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 POC1BQ8TC44 478 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 ACOT11Q8WXI4 607 aaPredicted RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 HIST1H2ACQ93077 130 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 ZNF587Q96SQ5 575 aaPredicted RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 TUBA1CQ9BQE3 449 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 IFT27Q9BW83 186 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 MRPS26Q9BYN8 205 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 PLA2G12AQ9BZM1 189 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 TOR3AQ9H497 397 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 SERINC1Q9NRX5 453 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 ADAM10O14672 748 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 IMPA2O14732 288 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 RNF13O43567 381 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 OR5F1O95221 314 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 GYPBP06028 91 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 GRPRP30550 384 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 MAGEA2P43356 314 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 RPL5P46777 297 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 SUCLG1P53597 346 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 DSCR4P56555 118 aaPredicted RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 CLDN15P56746 228 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 ERVK-25P63136 954 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 EGR4Q05215 589 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 CBX3Q13185 183 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 C1orf140Q5VVS0 124 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 PGBD2Q6P3X8 592 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 CHERPQ8IWX8 916 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 MOSPD2Q8NHP6 518 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 FNDC9Q8TBE3 224 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 DNAJA4Q8WW22 397 aaPredicted RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 DGCR14Q96DF8 476 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 SMAD5Q99717 465 aaKnown RBP8.3□□□□□ -1.08
USP4-202ENST00000351842 C9orf16Q9BUW7 83 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 TAPBPLQ9BX59 468 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 Q9H521 79 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 MED29Q9NX70 200 aa8.3□□□□□ -1.08
USP4-202ENST00000351842 TRGV5A0A0B4J1U4 118 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 A0A1W2PQD3 144 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 C7orf72A4D263 438 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PFDN1O60925 122 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SEMG1P04279 462 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 HLA-DOBP13765 273 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PMS2P3Q13401 168 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 DAG1Q14118 895 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ATG4DQ86TL0 474 aaPredicted RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 CMIPQ8IY22 773 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SNRNP40Q96DI7 357 aaKnown RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 FRMD6Q96NE9 622 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TTTY10Q9BZA0 68 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TBC1D23Q9NUY8 699 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms