RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IGHV1OR15-1A0A075B7D0 117 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 IGHV2-70DA0A0C4DH43 119 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 VGLL3A8MV65 326 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 NPIPA7E9PJI5 369 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PRRG1O14668 218 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 MSH4O15457 936 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ZSCAN12O43309 604 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 B4GALT2O60909 372 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 BCAS1O75363 584 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ERLIN1O75477 346 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 DUX4L4P0CJ87 422 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 NPIPA8P0DM63 369 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF19P17023 458 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 UQCRC2P22695 453 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 CCNCP24863 283 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 EPHX2P34913 555 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ATP5OP48047 213 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PPT1P50897 306 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PLK1P53350 603 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PLA2G16P53816 162 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 STX17P56962 302 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ACTR3P61158 418 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 EWSR1Q01844 656 aaKnown RBP eCLIP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 SLC10A7Q0GE19 358 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PJVKQ0ZLH3 352 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 MESDQ14696 234 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PDK3Q15120 406 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 IMMTQ16891 758 aaKnown RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 TTC23Q5W5X9 447 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PYHIN1Q6K0P9 492 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF544Q6NX49 715 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 FAM71F2Q6NXP2 309 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 WDR74Q6RFH5 385 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 EFL1Q7Z2Z2 1120 aaKnown RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF100Q8IYN0 542 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 DHRSXQ8N5I4 330 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 BHLHE23Q8NDY6 225 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 BBS1Q8NFJ9 593 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 OR10H4Q8NGA5 316 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 FRAT1Q92837 279 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 NT5C3BQ969T7 300 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 CYYR1Q96J86 154 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 CELF6Q96J87 481 aaKnown RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ZIM3Q96PE6 472 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 CYP2S1Q96SQ9 504 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 SRXN1Q9BYN0 137 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 MEAF6Q9HAF1 191 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PDFQ9HBH1 243 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 HYPKQ9NX55 129 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 C6orf203Q9P0P8 240 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 GNG12Q9UBI6 72 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 RNF14Q9UBS8 474 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 NPIPA1Q9UND3 350 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 CELA1Q9UNI1 258 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PLLPQ9Y342 182 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 TMED5Q9Y3A6 229 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ALG6Q9Y672 507 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ATP7BP35670 1465 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 CCDC18Q5T9S5 1454 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 COL24A1Q17RW2 1714 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 FMN2Q9NZ56 1722 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PARP4Q9UKK3 1724 aaKnown RBP2.36□□□□□ -2.03
HMGB1-201ENST00000326004 FRMPD4Q14CM0 1322 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 UNC79Q9P2D8 2635 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PAPPAQ13219 1627 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 NRXN3Q9Y4C0 1643 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 SPATA31E1Q6ZUB1 1445 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 PIK3C2AO00443 1686 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 TRIOBPQ9H2D6 2365 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 CDC42BPAQ5VT25 1732 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 XRN1Q8IZH2 1706 aaKnown RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 A0A1B0GWB2 263 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 FAM47DPA6NHR8 397 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF705EA8MWA4 302 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 H0Y8G0 127 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 SULT2B1O00204 365 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 FCN1O00602 326 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF208O43345 1280 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 OR1F1O43749 312 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 TPST2O60704 377 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ECI2O75521 394 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 LALBAP00709 142 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 SERPINA3P01011 423 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 CAPN1P07384 714 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 OR8U8P0C7N1 319 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 CPN1P15169 458 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 GABRR1P24046 479 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 HOXD10P28358 340 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 HPCAL1P37235 193 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 HNRNPA3P51991 378 aaKnown RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 RPS8P62241 208 aaKnown RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 IRX3P78415 501 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 CHRNB3Q05901 458 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 EGFEM1PQ0D2K5 195 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ORC2Q13416 577 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ATF7IP2Q5U623 682 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 FAM199XQ6PEV8 388 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ACOT1Q86TX2 421 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF589Q86UQ0 364 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 MTURNQ8N3F0 131 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms