RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MAGEE2Q8TD90 523 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 NEU4Q8WWR8 484 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 CNOT9Q92600 299 aaKnown RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 RAB8BQ92930 207 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 TRNT1Q96Q11 434 aaKnown RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 DPY30Q9C005 99 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 CRNNQ9UBG3 495 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 ZDHHC2Q9UIJ5 367 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 CFAP73A6NFT4 308 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 AGAP5A6NIR3 686 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 LIPT2A6NK58 231 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 KLF11O14901 512 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 STAMBPO95630 424 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 CXCR1P25024 350 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ARRB2P32121 409 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 CLNS1AP54105 237 aaKnown RBP12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 NAAAQ02083 359 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 FUT5Q11128 374 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 SCGB2A2Q13296 93 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ZSWIM7Q19AV6 140 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 TMEM225Q6GV28 225 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ANKRD16Q6P6B7 361 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ZCCHC23Q6ZST2 131 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 GPAT4Q86UL3 456 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 MEX3DQ86XN8 651 aaKnown RBP12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ZIC4Q8N9L1 334 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 LINC01356Q8N9X3 169 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 NUP37Q8NFH4 326 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 OR1K1Q8NGR3 316 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 TESCQ96BS2 214 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ZG16BQ96DA0 208 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 AURKBQ96GD4 344 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ANKRD27Q96NW4 1050 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 ZNF442Q9H7R0 627 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 MTHFD2LQ9H903 347 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 SLC17A7Q9P2U7 560 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 MARCOQ9UEW3 520 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 TMEFF2Q9UIK5 374 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 MGAM2Q2M2H8 2515 aa12.85□□□□□ -0.35
CCDC88B-201ENST00000301897 A0A0A6YYJ9 748 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 CLDN24A6NM45 220 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 SLCO1B7G3V0H7 640 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 SCN2BO60939 215 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 CPSF4O95639 269 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 DAOP14920 347 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 IL7RP16871 459 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 PLAURQ03405 335 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 RUNX1T1Q06455 604 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 CEACAM7Q14002 265 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 OR7A5Q15622 319 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 LRRC74BQ6ZQY2 392 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 TRIML2Q8N7C3 387 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 TMEM99Q8N816 258 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 ANKK1Q8NFD2 765 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 ZFAND2BQ8WV99 257 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 WDR60Q8WVS4 1066 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 ZNF385AQ96PM9 386 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 SLC35A5Q9BS91 424 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 TAPBPLQ9BX59 468 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 ADAM19Q9H013 955 aa12.84□□□□□ -0.35
CCDC88B-201ENST00000301897 TLDC2A0PJX2 215 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 ZC3H12DA2A288 527 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 hCG_2039718K7EN88 272 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 HMGN4O00479 90 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 AP3D1O14617 1153 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 AKR7A3O95154 331 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 LGI1O95970 557 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 IGLV1-44P01699 117 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 DBIP07108 87 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 CECR9P0C854 216 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 APEX1P27695 318 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 COPZ1P61923 177 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 EPS8Q12929 822 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 CASP8Q14790 479 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 C12orf54Q6X4T0 127 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 ANKRD46Q86W74 232 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 PEX5LQ8IYB4 626 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 KIRREL3Q8IZU9 778 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 ZNF786Q8N393 782 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 IL17RDQ8NFM7 739 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 TCP10LQ8TDR4 215 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 BCL2L2Q92843 193 aaPredicted RBP12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 SLC38A1Q9H2H9 487 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 RASD1Q9Y272 281 aa12.83□□□□□ -0.36
CCDC88B-201ENST00000301897 A0A096LPI6 279 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 LRP5LA4QPB2 252 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 A8MVM7 634 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 IGKV3-15P01624 115 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 ITGA2P17301 1181 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 NPR2P20594 1047 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 RPS4Y1P22090 263 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 LRRC74AQ0VAA2 488 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 MRPL2Q5T653 305 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 VHLLQ6RSH7 139 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 CCDC36Q8IYA8 594 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 LRRC34Q8IZ02 419 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 CCDC115Q96NT0 180 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 SOX7Q9BT81 388 aa12.82□□□□□ -0.36
CCDC88B-201ENST00000301897 LINC00470Q9BZP3 86 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms