RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ADIRFQ15847 76 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 ESCO2Q56NI9 601 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 GAS2L1Q99501 681 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 HSFX1Q9UBD0 423 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 RHBDD3Q9Y3P4 386 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 UGT2A1Q9Y4X1 527 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 FAM171A2A8MVW0 826 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF195O14628 629 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 FBXW12Q6X9E4 464 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CREB3L4Q8TEY5 395 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 BMFQ96LC9 184 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 PKMYT1Q99640 499 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 FBXL4Q9UKA2 621 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CACNA1GO43497 2377 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 A8MVM7 634 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CYB5BO43169 146 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 NSA2O95478 260 aaKnown RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 EGFP01133 1207 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 DDCP20711 480 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 UBE2NP61088 152 aaKnown RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 DPPA4Q7L190 304 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CYB561A3Q8NBI2 242 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 TMEM19Q96HH6 336 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CPPED1Q9BRF8 314 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 HRASLS2Q9NWW9 162 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 LHX3Q9UBR4 397 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 AOAHP28039 575 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CTXN1P60606 82 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 LTBQ06643 244 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 RAB40BQ12829 278 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 KIAA0319Q5VV43 1072 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 OR4C11Q6IEV9 310 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CD300LGQ6UXG3 332 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 TCEAL8Q8IYN2 117 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 OR9K2Q8NGE7 335 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 C4orf36Q96KX1 117 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 HOXD1Q9GZZ0 328 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 POFUT1Q9H488 388 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SIDT1Q9NXL6 827 aaKnown RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SLC23A2Q9UGH3 650 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 HEATR5AQ86XA9 2040 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 LAP3P28838 519 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 DPM1O60762 260 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 METTL15P1P0C7V9 234 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 F3P13726 295 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 DAP3P51398 398 aaKnown RBP9.21□□□□□ -0.93
COL6A3-201ENST00000295550 PLCXD3Q63HM9 321 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 MFSD6LQ8IWD5 586 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 DAZLQ92904 295 aaKnown RBP9.21□□□□□ -0.93
COL6A3-201ENST00000295550 PCNX1Q96RV3 2341 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 SERPINA2P20848 420 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 ARNTP27540 789 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 AAK1Q2M2I8 961 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 MPEG1Q2M385 716 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 VASNQ6EMK4 673 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 OR8J2Q8NGG1 315 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 LMX1AQ8TE12 382 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 RBPMSQ93062 196 aaKnown RBP9.21□□□□□ -0.93
COL6A3-201ENST00000295550 CDH20Q9HBT6 801 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 THBS1P07996 1170 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 CNR1P21554 472 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 PDZD11Q5EBL8 140 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 IL20RBQ6UXL0 311 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 S100A7AQ86SG5 101 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 NANPQ8TBE9 248 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 RADILQ96JH8 1075 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 ARHGAP39Q9C0H5 1083 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 SLC6A17Q9H1V8 727 aa9.21□□□□□ -0.93
COL6A3-201ENST00000295550 LATO43561 262 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 GJB3O75712 270 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 LPLP06858 475 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 SBK2P0C263 348 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 JUNBP17275 347 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 DHPSP49366 369 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 RAB33AQ14088 237 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 XKR7Q5GH72 579 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 PDZD3Q86UT5 571 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 NAGSQ8N159 534 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 PRRC1Q96M27 445 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF582Q96NG8 517 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 A6NIZ1 184 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 NFYBP25208 207 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 RAP1BP61224 184 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 RAP1AP62834 184 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 EXOSC6Q5RKV6 272 aaKnown RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF322Q6U7Q0 402 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 LCTLQ6UWM7 567 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 C15orf54Q8N8G6 183 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 OR5D14Q8NGL3 314 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 ASB11Q8WXH4 323 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 FAM71F1Q96KD3 344 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 DEFB126Q9BYW3 111 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 PTBP3O95758 552 aaKnown RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 GABRA5P31644 462 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 CXADRP78310 365 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 BCL7AQ4VC05 210 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 FAM185AQ8N0U4 392 aa9.21□□□□□ -0.94
COL6A3-201ENST00000295550 PCNPQ8WW12 178 aaKnown RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-201ENST00000295550 GJD2Q9UKL4 321 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms