RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZNF565Q8N9K5 539 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 SLC16A11Q8NCK7 471 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 OR1L3Q8NH93 324 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 C16orf52Q8NHV5 167 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 OXGR1Q96P68 337 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 CSF3RQ99062 836 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 SMURF1Q9HCE7 757 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 PILRBQ9UKJ0 227 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 UBBP0CG47 229 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ART1P52961 327 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 PUDPQ08623 228 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 TMEM176BQ3YBM2 270 aaPredicted RBP12.57□□□□□ -0.4
LDLR-201ENST00000252444 CPT1CQ8TCG5 803 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 LRRC3BQ96PB8 259 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 MED28Q9H204 178 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 WRBO00258 174 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 CHRM4P08173 479 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ADH6P28332 368 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 NAA10P41227 235 aaPredicted RBP12.57□□□□□ -0.4
LDLR-201ENST00000252444 HERV-K104P61576 105 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ZNF141Q15928 474 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 PRTGQ2VWP7 1150 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 THEM4Q5T1C6 240 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 RAB12Q6IQ22 244 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 SLC16A9Q7RTY1 509 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 LINC01555Q8NAE3 123 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 MICU1Q9BPX6 476 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 B3GNT4Q9C0J1 378 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 COMMD3Q9UBI1 195 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 CBLP22681 906 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 BMXP51813 675 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 METAP1P53582 386 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 ATP1B3P54709 279 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 SLC10A1Q14973 349 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 THOC7Q6I9Y2 204 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 AKAP14Q86UN6 197 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 MFSD8Q8NHS3 518 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 PATE1Q8WXA2 126 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 AMBRA1Q9C0C7 1298 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 C4orf47A7E2U8 309 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 PRRG2O14669 202 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 CHMP24386 653 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 RPS5P46782 204 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 ENTPD1P49961 510 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 POU3F1Q03052 451 aaPredicted RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 CCDC58Q4VC31 144 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 ZNF385BQ569K4 471 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 METAP1DQ6UB28 335 aaPredicted RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 ISLR2Q6UXK2 745 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 MRPL41Q8IXM3 137 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 MAML2Q8IZL2 1156 aaPredicted RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 ZFAND2BQ8WV99 257 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 C12orf43Q96C57 262 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 USB1Q9BQ65 265 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 BABAM2Q9NXR7 383 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 KCNIP1Q9NZI2 227 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 hCG_2014768A0A024R1R8 64 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 RLN1P04808 185 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 EIF1AXP47813 144 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 KIAA0040Q15053 153 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 COX20Q5RI15 118 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 PGBD2Q6P3X8 592 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 MTFR2Q6P444 385 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 KLBQ86Z14 1044 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 CHERPQ8IWX8 916 aaKnown RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 OR8S1Q8NH09 359 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 CTRCQ99895 268 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 USP22Q9UPT9 525 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 RPH3AQ9Y2J0 694 aaPredicted RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 SNPHO15079 494 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 IL1AP01583 271 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 COL28A1Q2UY09 1125 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 TMEM211Q6ICI0 200 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 NKAIN3Q8N8D7 197 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 GDPD1Q8N9F7 314 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 OR2Y1Q8NGV0 311 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 CPNE4Q96A23 557 aaPredicted RBP12.56□□□□□ -0.4
LDLR-201ENST00000252444 TECTBQ96PL2 329 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 B3GAT1Q9P2W7 334 aa12.56□□□□□ -0.4
LDLR-201ENST00000252444 TNFRSF10AO00220 468 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 PVALBP20472 110 aaPredicted RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 PTBP1P26599 531 aaKnown RBP eCLIP12.55□□□□□ -0.42e-11■□□□□ 9.4
LDLR-201ENST00000252444 ERVK-25P63136 954 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 TSSK4Q6SA08 328 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 SHISA6Q6ZSJ9 500 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 AMBNQ9NP70 447 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 DOCK3Q8IZD9 2030 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 SURF4O15260 269 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 DNPH1O43598 174 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 MRPL3P09001 348 aaKnown RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 SP9P0CG40 484 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 PGAM2P15259 253 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 RAE1P78406 368 aaKnown RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 MPEG1Q2M385 716 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 ZNF322Q6U7Q0 402 aaPredicted RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 Q7L0L9 218 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 CDH24Q86UP0 819 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 CPEB3Q8NE35 698 aaKnown RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 GATAD2BQ8WXI9 593 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 ZNF639Q9UID6 485 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms