RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CPLX4Q7Z7G2 160 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 SMARCC2Q8TAQ2 1214 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 TOMM22Q9NS69 142 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 U2AF2P26368 475 aaKnown RBP eCLIP5.32□□□□□ -1.561e-6■■■□□ 14.9
SCN1A-220ENST00000641603 AMOTQ4VCS5 1084 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 ANO6Q4KMQ2 910 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 MEX3CQ5U5Q3 659 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 CDK5RAP3Q96JB5 506 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 PUS7Q96PZ0 661 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 SMC6Q96SB8 1091 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 HYPKQ9NX55 129 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 RUSC2Q8N2Y8 1516 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 BMP2KQ9NSY1 1161 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 SNAPC4Q5SXM2 1469 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 ZNF75DP51815 510 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NAPGQ99747 312 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 TBC1D2BQ9UPU7 963 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 LRRD1A4D1F6 860 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NEBLO76041 1014 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 MAPK8IP2Q13387 824 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 MCM6Q14566 821 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NBPF10Q6P3W6 841 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 ATRIPQ8WXE1 791 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 DESP17661 470 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 SNCBQ16143 134 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NBPF6Q5VWK0 638 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 PHLDB3Q6NSJ2 640 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NBPF5PQ86XG9 351 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 KIAA1524Q8TCG1 905 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NBPF4Q96M43 638 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 TSG101Q99816 390 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 MOV10L1Q9BXT6 1211 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 NACAP1Q9BZK3 213 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 CLSTN2Q9H4D0 955 aa5.32□□□□□ -1.56
SCN1A-220ENST00000641603 DDX41Q9UJV9 622 aaKnown RBP5.32□□□□□ -1.56
SCN1A-220ENST00000641603 HIP1RO75146 1068 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 TRERF1Q96PN7 1200 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 WDHD1O75717 1129 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 NUP88Q99567 741 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 FAM114A2Q9NRY5 505 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 POTEJP0CG39 1038 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 UBASH3AP57075 661 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 FAM177A1Q8N128 213 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 PDLIM2Q96JY6 352 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 GBP5Q96PP8 586 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 MORC2Q9Y6X9 1032 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 ASXL1Q8IXJ9 1541 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 RNASELQ05823 741 aaKnown RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 LRRC23Q53EV4 343 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 FSIP1Q8NA03 581 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 SCLT1Q96NL6 688 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 FBXO18Q8NFZ0 1043 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 TCP11Q8WWU5 503 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 GTF3C6Q969F1 213 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 PSD3Q9NYI0 1048 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 POLR3AO14802 1390 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 TEX14Q8IWB6 1497 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 KCNJ6P48051 423 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 AMPD3Q01432 767 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 TEFQ10587 303 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 TAOK1Q7L7X3 1001 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 TMTC1Q8IUR5 882 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 USP48Q86UV5 1035 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 STMN2Q93045 179 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 Q9H521 79 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 JADE2Q9NQC1 790 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 MTRF1LQ9UGC7 380 aaKnown RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 GOLGA6BA6NDN3 693 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 IFT20Q8IY31 132 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 SPTLC3Q9NUV7 552 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 MYL5Q02045 173 aa5.31□□□□□ -1.56
SCN1A-220ENST00000641603 CTNNBL1Q8WYA6 563 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-220ENST00000641603 HLTFQ14527 1009 aaKnown RBP eCLIP5.3□□□□□ -1.566e-7■■■■□ 22.5
SCN1A-220ENST00000641603 ANKRD27Q96NW4 1050 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 RBSNQ9H1K0 784 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 MYO1CO00159 1063 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 CREB3O43889 395 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 TRIM4Q9C037 500 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 DAAM1Q9Y4D1 1078 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 PCK1P35558 622 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 FAM160A1Q05DH4 1040 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 TADA2BQ86TJ2 420 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 MAP4K4O95819 1239 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 PTGS1P23219 599 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 GKAP1Q5VSY0 366 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 TRPC3Q13507 836 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC152Q4G0S7 254 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 RNF10Q8N5U6 811 aaKnown RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 SATB2Q9UPW6 733 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 GJB2P29033 226 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 ETF1P62495 437 aaKnown RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 PSME1Q06323 249 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 SAAL1Q96ER3 474 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 C8orf76Q96K31 380 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 GUCY2CP25092 1073 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 VPS53Q5VIR6 699 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 ARMC2Q8NEN0 867 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 KIAA0753Q2KHM9 967 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC170Q8IYT3 715 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 LZICQ8WZA0 190 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms