RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ATF5Q9Y2D1 282 aaPredicted RBP22.37■■□□□ 1.17
CLN3-263ENST00000637871 GLRX3O76003 335 aaKnown RBP22.36■■□□□ 1.17
CLN3-263ENST00000637871 ANAPC15P60006 121 aa22.36■■□□□ 1.17
CLN3-263ENST00000637871 CWF19L2Q2TBE0 894 aaKnown RBP22.36■■□□□ 1.17
CLN3-263ENST00000637871 BICDL1Q6ZP65 573 aa22.36■■□□□ 1.17
CLN3-263ENST00000637871 ESYT1Q9BSJ8 1104 aa22.36■■□□□ 1.17
CLN3-263ENST00000637871 IGKV5-2P06315 115 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 CHMLP26374 656 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 DEKP35659 375 aaKnown RBP22.35■■□□□ 1.17
CLN3-263ENST00000637871 ANKRD36CQ5JPF3 1778 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 SRCAPQ6ZRS2 3230 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 TRIM6-TRIM34B2RNG4 842 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 ST18O60284 1047 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 G3BP1Q13283 466 aaKnown RBP eCLIP22.35■■□□□ 1.17
CLN3-263ENST00000637871 TBC1D9BQ66K14 1250 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 CNTROBQ8N137 903 aa22.35■■□□□ 1.17
CLN3-263ENST00000637871 IL17RAQ96F46 866 aa22.34■■□□□ 1.17
CLN3-263ENST00000637871 SUCLG2Q96I99 432 aa22.34■■□□□ 1.17
CLN3-263ENST00000637871 BCL11AQ9H165 835 aa22.34■■□□□ 1.17
CLN3-263ENST00000637871 IL1RAPL2Q9NP60 686 aa22.34■■□□□ 1.17
CLN3-263ENST00000637871 GPTP24298 496 aa22.33■■□□□ 1.17
CLN3-263ENST00000637871 ERVV-1B6SEH8 477 aa22.32■■□□□ 1.16
CLN3-263ENST00000637871 DDIT3P35638 169 aa22.32■■□□□ 1.16
CLN3-263ENST00000637871 MCM2P49736 904 aa22.32■■□□□ 1.16
CLN3-263ENST00000637871 PI4K2BQ8TCG2 481 aa22.32■■□□□ 1.16
CLN3-263ENST00000637871 RILPL2Q969X0 211 aa22.32■■□□□ 1.16
CLN3-263ENST00000637871 MYD88Q99836 296 aa22.32■■□□□ 1.16
CLN3-263ENST00000637871 FRAT2O75474 233 aaPredicted RBP22.31■■□□□ 1.16
CLN3-263ENST00000637871 NFIXQ14938 502 aa22.31■■□□□ 1.16
CLN3-263ENST00000637871 GIGYF2Q6Y7W6 1299 aaKnown RBP22.31■■□□□ 1.16
CLN3-263ENST00000637871 MTFR1LQ9H019 292 aa22.31■■□□□ 1.16
CLN3-263ENST00000637871 ATP5J2-PTCD1G3V325 749 aa22.31■■□□□ 1.16
CLN3-263ENST00000637871 BICC1Q9H694 974 aaKnown RBP22.31■■□□□ 1.16
CLN3-263ENST00000637871 ECHDC1Q9NTX5 307 aa22.31■■□□□ 1.16
CLN3-263ENST00000637871 COL24A1Q17RW2 1714 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 UBN2Q6ZU65 1347 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 AFDNP55196 1824 aaKnown RBP22.3■■□□□ 1.16
CLN3-263ENST00000637871 FAM177BA6PVY3 158 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 HSP90AA1P07900 732 aaKnown RBP22.3■■□□□ 1.16
CLN3-263ENST00000637871 MMP10P09238 476 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 IFIT2P09913 472 aaKnown RBP22.3■■□□□ 1.16
CLN3-263ENST00000637871 DDR1Q08345 913 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 NUTM1Q86Y26 1132 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 SLC16A10Q8TF71 515 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 KAZALD1Q96I82 304 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 ZNF652Q9Y2D9 606 aa22.3■■□□□ 1.16
CLN3-263ENST00000637871 PTMSP20962 102 aa22.29■■□□□ 1.16
CLN3-263ENST00000637871 RUFY2Q8WXA3 655 aa22.29■■□□□ 1.16
CLN3-263ENST00000637871 NIP7Q9Y221 180 aaKnown RBP eCLIP22.29■■□□□ 1.16
CLN3-263ENST00000637871 RABL6Q3YEC7 729 aaPredicted RBP22.28■■□□□ 1.16
CLN3-263ENST00000637871 NLGN1Q8N2Q7 840 aa22.28■■□□□ 1.16
CLN3-263ENST00000637871 COPRSQ9NQ92 184 aa22.28■■□□□ 1.16
CLN3-263ENST00000637871 HIP1O00291 1037 aa22.28■■□□□ 1.16
CLN3-263ENST00000637871 CLEC4GQ6UXB4 293 aa22.28■■□□□ 1.16
CLN3-263ENST00000637871 CWC22Q9HCG8 908 aaKnown RBP22.28■■□□□ 1.16
CLN3-263ENST00000637871 TM4SF1P30408 202 aa22.27■■□□□ 1.16
CLN3-263ENST00000637871 TCIRG1Q13488 830 aa22.27■■□□□ 1.16
CLN3-263ENST00000637871 PTGER2P43116 358 aa22.26■■□□□ 1.15
CLN3-263ENST00000637871 GSE1Q14687 1217 aa22.26■■□□□ 1.15
CLN3-263ENST00000637871 ZNF34Q8IZ26 560 aa22.26■■□□□ 1.15
CLN3-263ENST00000637871 CCDC24Q8N4L8 307 aa22.26■■□□□ 1.15
CLN3-263ENST00000637871 POLRMTO00411 1230 aaKnown RBP22.25■■□□□ 1.15
CLN3-263ENST00000637871 SETDB2Q96T68 719 aa22.25■■□□□ 1.15
CLN3-263ENST00000637871 TSHZ3Q63HK5 1081 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 CCDC191Q8NCU4 936 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 EVI5LQ96CN4 794 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 SGIP1Q9BQI5 828 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 CARMIL3Q8ND23 1372 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 DDX11L8A8MPP1 907 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 H7C1W4 665 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 ISCA1Q9BUE6 129 aa22.24■■□□□ 1.15
CLN3-263ENST00000637871 MCM4P33991 863 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 HSP90AB3PQ58FF7 597 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 SUSD4Q5VX71 490 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 NLRP10Q86W26 655 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 TICAM2Q86XR7 235 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 JARID2Q92833 1246 aaPredicted RBP22.23■■□□□ 1.15
CLN3-263ENST00000637871 SPON1Q9HCB6 807 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 ANO2Q9NQ90 1003 aa22.23■■□□□ 1.15
CLN3-263ENST00000637871 CWC25Q9NXE8 425 aaPredicted RBP22.23■■□□□ 1.15
CLN3-263ENST00000637871 RGL2O15211 777 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 SGSM2O43147 1006 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 AACSQ86V21 672 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 SPRYD3Q8NCJ5 442 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 GBP4Q96PP9 640 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 PARP3Q9Y6F1 533 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 NRXN2Q9P2S2 1712 aa22.22■■□□□ 1.15
CLN3-263ENST00000637871 SASH1O94885 1247 aa22.21■■□□□ 1.15
CLN3-263ENST00000637871 SERPINB2P05120 415 aa22.21■■□□□ 1.15
CLN3-263ENST00000637871 CASP7P55210 303 aa22.21■■□□□ 1.15
CLN3-263ENST00000637871 KIAA1211Q6ZU35 1233 aa22.21■■□□□ 1.15
CLN3-263ENST00000637871 SYNE4Q8N205 404 aa22.21■■□□□ 1.15
CLN3-263ENST00000637871 PA2G4Q9UQ80 394 aaKnown RBP22.21■■□□□ 1.15
CLN3-263ENST00000637871 POLD1P28340 1107 aa22.2■■□□□ 1.15
CLN3-263ENST00000637871 NUCB2P80303 420 aa22.2■■□□□ 1.15
CLN3-263ENST00000637871 TRIM28Q13263 835 aaKnown RBP22.2■■□□□ 1.15
CLN3-263ENST00000637871 RAB3GAP1Q15042 981 aa22.2■■□□□ 1.15
CLN3-263ENST00000637871 NBPF5PQ86XG9 351 aaPredicted RBP22.2■■□□□ 1.15
CLN3-263ENST00000637871 NTSR2O95665 410 aa22.2■■□□□ 1.14
CLN3-263ENST00000637871 ABCC12Q96J65 1359 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms