RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 C16orf71Q8IYS4 520 aaPredicted RBP24.67■■□□□ 1.54
CLN3-260ENST00000637578 DDNO94850 711 aaPredicted RBP24.67■■□□□ 1.54
CLN3-260ENST00000637578 RTFDC1Q9BY42 306 aaPredicted RBP24.67■■□□□ 1.54
CLN3-260ENST00000637578 FLIIQ13045 1269 aa24.66■■□□□ 1.54
CLN3-260ENST00000637578 TMC4Q7Z404 712 aa24.66■■□□□ 1.54
CLN3-260ENST00000637578 HSP90B1P14625 803 aaKnown RBP24.65■■□□□ 1.54
CLN3-260ENST00000637578 FSTL1Q12841 308 aa24.65■■□□□ 1.54
CLN3-260ENST00000637578 L3MBTL3Q96JM7 780 aaPredicted RBP24.65■■□□□ 1.54
CLN3-260ENST00000637578 TMX4Q9H1E5 349 aaPredicted RBP24.65■■□□□ 1.54
CLN3-260ENST00000637578 VPS33BQ9H267 617 aa24.65■■□□□ 1.54
CLN3-260ENST00000637578 CDHR2Q9BYE9 1310 aa24.63■■□□□ 1.53
CLN3-260ENST00000637578 ZNF541Q9H0D2 1346 aa24.63■■□□□ 1.53
CLN3-260ENST00000637578 COL4A5P29400 1685 aa24.63■■□□□ 1.53
CLN3-260ENST00000637578 NEXNQ0ZGT2 675 aa24.63■■□□□ 1.53
CLN3-260ENST00000637578 JDP2Q8WYK2 163 aa24.63■■□□□ 1.53
CLN3-260ENST00000637578 CELF1Q92879 486 aaKnown RBP24.63■■□□□ 1.53
CLN3-260ENST00000637578 CACNA1FO60840 1977 aa24.63■■□□□ 1.53
CLN3-260ENST00000637578 NEURL1BA8MQ27 555 aa24.62■■□□□ 1.53
CLN3-260ENST00000637578 PDE8AO60658 829 aa24.62■■□□□ 1.53
CLN3-260ENST00000637578 MPNDQ8N594 471 aa24.61■■□□□ 1.53
CLN3-260ENST00000637578 SUPT20HQ8NEM7 779 aa24.61■■□□□ 1.53
CLN3-260ENST00000637578 TAF1P21675 1872 aa24.61■■□□□ 1.53
CLN3-260ENST00000637578 FKBP5Q13451 457 aaPredicted RBP24.6■■□□□ 1.53
CLN3-260ENST00000637578 CWF19L2Q2TBE0 894 aaKnown RBP24.6■■□□□ 1.53
CLN3-260ENST00000637578 DPP8Q6V1X1 898 aaPredicted RBP24.6■■□□□ 1.53
CLN3-260ENST00000637578 LARGE2Q8N3Y3 721 aa24.6■■□□□ 1.53
CLN3-260ENST00000637578 SMC1BQ8NDV3 1235 aa24.6■■□□□ 1.53
CLN3-260ENST00000637578 JARID2Q92833 1246 aaPredicted RBP24.6■■□□□ 1.53
CLN3-260ENST00000637578 DNAAF4Q8WXU2 420 aa24.59■■□□□ 1.53
CLN3-260ENST00000637578 CEP350Q5VT06 3117 aa24.59■■□□□ 1.53
CLN3-260ENST00000637578 COL4A1P02462 1669 aa24.59■■□□□ 1.53
CLN3-260ENST00000637578 H7C1W4 665 aa24.59■■□□□ 1.53
CLN3-260ENST00000637578 RPS8P62241 208 aaKnown RBP24.59■■□□□ 1.53
CLN3-260ENST00000637578 GPC2Q8N158 579 aa24.59■■□□□ 1.53
CLN3-260ENST00000637578 LRRC37AA6NMS7 1700 aa24.58■■□□□ 1.53
CLN3-260ENST00000637578 CCDC152Q4G0S7 254 aa24.58■■□□□ 1.52
CLN3-260ENST00000637578 IQCA1LA6NCM1 817 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 E9PSI1 815 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 PPIP5K2O43314 1243 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 GCKRQ14397 625 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 AOC3Q16853 763 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 LINS1Q8NG48 757 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 SEC31BQ9NQW1 1179 aa24.57■■□□□ 1.52
CLN3-260ENST00000637578 APLP1P51693 650 aa24.56■■□□□ 1.52
CLN3-260ENST00000637578 KIAA2012Q0VF49 1180 aa24.56■■□□□ 1.52
CLN3-260ENST00000637578 EIF6P56537 245 aaKnown RBP24.55■■□□□ 1.52
CLN3-260ENST00000637578 SLFN5Q08AF3 891 aa24.55■■□□□ 1.52
CLN3-260ENST00000637578 NIM1KQ8IY84 436 aa24.55■■□□□ 1.52
CLN3-260ENST00000637578 CASP7P55210 303 aa24.54■■□□□ 1.52
CLN3-260ENST00000637578 TTLL11Q8NHH1 800 aa24.54■■□□□ 1.52
CLN3-260ENST00000637578 TAF1DQ9H5J8 278 aaPredicted RBP24.54■■□□□ 1.52
CLN3-260ENST00000637578 DUOX1Q9NRD9 1551 aa24.54■■□□□ 1.52
CLN3-260ENST00000637578 SCN4AP35499 1836 aa24.54■■□□□ 1.52
CLN3-260ENST00000637578 CTSWP56202 376 aa24.54■■□□□ 1.52
CLN3-260ENST00000637578 PLA2G12BQ9BX93 195 aa24.54■■□□□ 1.52
CLN3-260ENST00000637578 UBE3BQ7Z3V4 1068 aa24.53■■□□□ 1.52
CLN3-260ENST00000637578 ZNRF3Q9ULT6 936 aa24.53■■□□□ 1.52
CLN3-260ENST00000637578 GPSM2P81274 684 aa24.52■■□□□ 1.52
CLN3-260ENST00000637578 BEND3Q5T5X7 828 aa24.52■■□□□ 1.52
CLN3-260ENST00000637578 TRMT2AQ8IZ69 625 aaKnown RBP24.52■■□□□ 1.52
CLN3-260ENST00000637578 PODXL2Q9NZ53 605 aa24.52■■□□□ 1.52
CLN3-260ENST00000637578 HACL1Q9UJ83 578 aa24.52■■□□□ 1.52
CLN3-260ENST00000637578 NSFL1CQ9UNZ2 370 aaKnown RBP24.52■■□□□ 1.52
CLN3-260ENST00000637578 RTL9Q8NET4 1388 aa24.52■■□□□ 1.52
CLN3-260ENST00000637578 F6X3S4 739 aa24.51■■□□□ 1.51
CLN3-260ENST00000637578 POLLQ9UGP5 575 aa24.51■■□□□ 1.51
CLN3-260ENST00000637578 POTEIP0CG38 1075 aa24.5■■□□□ 1.51
CLN3-260ENST00000637578 POTEJP0CG39 1038 aa24.5■■□□□ 1.51
CLN3-260ENST00000637578 CCDC85AQ96PX6 553 aaPredicted RBP24.5■■□□□ 1.51
CLN3-260ENST00000637578 LTBP1Q14766 1721 aa24.5■■□□□ 1.51
CLN3-260ENST00000637578 CDCA7LQ96GN5 454 aa24.5■■□□□ 1.51
CLN3-260ENST00000637578 EPHX2P34913 555 aa24.49■■□□□ 1.51
CLN3-260ENST00000637578 CXCL9Q07325 125 aa24.49■■□□□ 1.51
CLN3-260ENST00000637578 CHADLQ6NUI6 762 aa24.49■■□□□ 1.51
CLN3-260ENST00000637578 SCNN1DP51172 638 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 WASHC4Q2M389 1173 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 LDHDQ86WU2 507 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 ANKRD18AQ8IVF6 992 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 DNAJC5GQ8N7S2 189 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 TBC1D16Q8TBP0 767 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 GREM2Q9H772 168 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 GJA3Q9Y6H8 435 aa24.48■■□□□ 1.51
CLN3-260ENST00000637578 CSF1RP07333 972 aa24.47■■□□□ 1.51
CLN3-260ENST00000637578 MRPL50Q8N5N7 158 aaKnown RBP24.47■■□□□ 1.51
CLN3-260ENST00000637578 CDC5LQ99459 802 aaKnown RBP24.47■■□□□ 1.51
CLN3-260ENST00000637578 YDJCA8MPS7 323 aa24.46■■□□□ 1.51
CLN3-260ENST00000637578 PNMA8AQ86V59 439 aaPredicted RBP24.46■■□□□ 1.51
CLN3-260ENST00000637578 C6orf229H3BNL8 230 aa24.46■■□□□ 1.51
CLN3-260ENST00000637578 BSDC1Q9NW68 430 aaPredicted RBP24.46■■□□□ 1.51
CLN3-260ENST00000637578 EYA3Q99504 573 aa24.45■■□□□ 1.5
CLN3-260ENST00000637578 MYH3P11055 1940 aa24.44■■□□□ 1.5
CLN3-260ENST00000637578 EPS15P42566 896 aa24.44■■□□□ 1.5
CLN3-260ENST00000637578 HNRNPUQ00839 825 aaKnown RBP eCLIP24.44■■□□□ 1.5
CLN3-260ENST00000637578 SSH1Q8WYL5 1049 aa24.44■■□□□ 1.5
CLN3-260ENST00000637578 ADAMTSL1Q8N6G6 1762 aa24.43■■□□□ 1.5
CLN3-260ENST00000637578 ALDH1L1O75891 902 aa24.43■■□□□ 1.5
CLN3-260ENST00000637578 CIAPIN1Q6FI81 312 aa24.43■■□□□ 1.5
CLN3-260ENST00000637578 ANKIB1Q9P2G1 1089 aa24.43■■□□□ 1.5
CLN3-260ENST00000637578 LMOD1P29536 600 aaPredicted RBP24.42■■□□□ 1.5
CLN3-260ENST00000637578 TNIP1Q15025 636 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms