RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 RIC1Q4ADV7 1423 aa25.65■■□□□ 1.7
CLN3-245ENST00000636172 C3orf67Q6ZVT6 689 aa25.65■■□□□ 1.7
CLN3-245ENST00000636172 TTLL11Q8NHH1 800 aa25.65■■□□□ 1.7
CLN3-245ENST00000636172 LRP5O75197 1615 aa25.64■■□□□ 1.69
CLN3-245ENST00000636172 ZBTB7AO95365 584 aa25.63■■□□□ 1.69
CLN3-245ENST00000636172 ST5P78524 1137 aa25.63■■□□□ 1.69
CLN3-245ENST00000636172 CHMP3Q9Y3E7 222 aa25.63■■□□□ 1.69
CLN3-245ENST00000636172 FAM161AQ3B820 660 aa25.63■■□□□ 1.69
CLN3-245ENST00000636172 CCDC85AQ96PX6 553 aaPredicted RBP25.63■■□□□ 1.69
CLN3-245ENST00000636172 ANKRD31Q8N7Z5 1873 aa25.62■■□□□ 1.69
CLN3-245ENST00000636172 RFX5P48382 616 aaPredicted RBP25.62■■□□□ 1.69
CLN3-245ENST00000636172 MTFR1LQ9H019 292 aa25.62■■□□□ 1.69
CLN3-245ENST00000636172 GREM2Q9H772 168 aa25.62■■□□□ 1.69
CLN3-245ENST00000636172 CENPQQ7L2Z9 268 aaPredicted RBP25.61■■□□□ 1.69
CLN3-245ENST00000636172 SF3B3Q15393 1217 aaKnown RBP25.6■■□□□ 1.69
CLN3-245ENST00000636172 NLRP3Q96P20 1036 aa25.6■■□□□ 1.69
CLN3-245ENST00000636172 CCDC152Q4G0S7 254 aa25.59■■□□□ 1.69
CLN3-245ENST00000636172 DCTPP1Q9H773 170 aa25.59■■□□□ 1.69
CLN3-245ENST00000636172 RTL9Q8NET4 1388 aa25.59■■□□□ 1.69
CLN3-245ENST00000636172 SMC5Q8IY18 1101 aa25.58■■□□□ 1.69
CLN3-245ENST00000636172 KLHDC4Q8TBB5 520 aa25.58■■□□□ 1.69
CLN3-245ENST00000636172 PA2G4Q9UQ80 394 aaKnown RBP25.58■■□□□ 1.69
CLN3-245ENST00000636172 ATF5Q9Y2D1 282 aaPredicted RBP25.58■■□□□ 1.69
CLN3-245ENST00000636172 ITGA6P23229 1130 aa25.58■■□□□ 1.68
CLN3-245ENST00000636172 PTPN12Q05209 780 aaKnown RBP25.58■■□□□ 1.68
CLN3-245ENST00000636172 CCDC57Q2TAC2 916 aa25.58■■□□□ 1.68
CLN3-245ENST00000636172 IFIT5Q13325 482 aaKnown RBP25.57■■□□□ 1.68
CLN3-245ENST00000636172 GCC1Q96CN9 775 aa25.57■■□□□ 1.68
CLN3-245ENST00000636172 COPRSQ9NQ92 184 aa25.57■■□□□ 1.68
CLN3-245ENST00000636172 BRIP1Q9BX63 1249 aa25.56■■□□□ 1.68
CLN3-245ENST00000636172 EXOC6BQ9Y2D4 811 aa25.56■■□□□ 1.68
CLN3-245ENST00000636172 COL4A1P02462 1669 aa25.55■■□□□ 1.68
CLN3-245ENST00000636172 ANKRD18BA2A2Z9 1011 aa25.55■■□□□ 1.68
CLN3-245ENST00000636172 SURF6O75683 361 aaKnown RBP25.55■■□□□ 1.68
CLN3-245ENST00000636172 ZNF594Q96JF6 807 aaPredicted RBP25.55■■□□□ 1.68
CLN3-245ENST00000636172 SEC31BQ9NQW1 1179 aa25.55■■□□□ 1.68
CLN3-245ENST00000636172 NOP58Q9Y2X3 529 aaKnown RBP25.55■■□□□ 1.68
CLN3-245ENST00000636172 KLRG2A4D1S0 409 aaPredicted RBP25.54■■□□□ 1.68
CLN3-245ENST00000636172 CRY2Q49AN0 593 aa25.54■■□□□ 1.68
CLN3-245ENST00000636172 TAF1P21675 1872 aa25.54■■□□□ 1.68
CLN3-245ENST00000636172 SIL1Q9H173 461 aa25.53■■□□□ 1.68
CLN3-245ENST00000636172 C10orf71Q711Q0 1435 aa25.53■■□□□ 1.68
CLN3-245ENST00000636172 COL11A2P13942 1736 aaPredicted RBP25.53■■□□□ 1.68
CLN3-245ENST00000636172 POLD1P28340 1107 aa25.53■■□□□ 1.68
CLN3-245ENST00000636172 SGIP1Q9BQI5 828 aa25.53■■□□□ 1.68
CLN3-245ENST00000636172 SPEF2Q9C093 1822 aa25.52■■□□□ 1.68
CLN3-245ENST00000636172 TAF7LQ5H9L4 462 aa25.51■■□□□ 1.67
CLN3-245ENST00000636172 PDE6BP35913 854 aa25.5■■□□□ 1.67
CLN3-245ENST00000636172 HSP90AB4PQ58FF6 505 aa25.5■■□□□ 1.67
CLN3-245ENST00000636172 KIF13BQ9NQT8 1826 aa25.5■■□□□ 1.67
CLN3-245ENST00000636172 APBB1O00213 710 aa25.49■■□□□ 1.67
CLN3-245ENST00000636172 PTGER2P43116 358 aa25.49■■□□□ 1.67
CLN3-245ENST00000636172 CDC5LQ99459 802 aaKnown RBP25.49■■□□□ 1.67
CLN3-245ENST00000636172 PUS3Q9BZE2 481 aaKnown RBP25.49■■□□□ 1.67
CLN3-245ENST00000636172 EYA2O00167 538 aa25.48■■□□□ 1.67
CLN3-245ENST00000636172 RAB11FIP3O75154 756 aa25.48■■□□□ 1.67
CLN3-245ENST00000636172 G3BP1Q13283 466 aaKnown RBP eCLIP25.48■■□□□ 1.67
CLN3-245ENST00000636172 DDX46Q7L014 1031 aaKnown RBP25.48■■□□□ 1.67
CLN3-245ENST00000636172 ATG9AQ7Z3C6 839 aa25.48■■□□□ 1.67
CLN3-245ENST00000636172 RPGRQ92834 1020 aaKnown RBP25.48■■□□□ 1.67
CLN3-245ENST00000636172 CIAO1O76071 339 aa25.47■■□□□ 1.67
CLN3-245ENST00000636172 NUCB1Q02818 461 aa25.47■■□□□ 1.67
CLN3-245ENST00000636172 OS9Q13438 667 aaPredicted RBP25.47■■□□□ 1.67
CLN3-245ENST00000636172 LRRC24Q50LG9 513 aa25.47■■□□□ 1.67
CLN3-245ENST00000636172 CELF1Q92879 486 aaKnown RBP25.47■■□□□ 1.67
CLN3-245ENST00000636172 PDZRN3Q9UPQ7 1066 aa25.47■■□□□ 1.67
CLN3-245ENST00000636172 HOXA10P31260 410 aaPredicted RBP25.47■■□□□ 1.67
CLN3-245ENST00000636172 ANKRD45Q5TZF3 282 aa25.47■■□□□ 1.67
CLN3-245ENST00000636172 FBXO3Q9UK99 471 aa25.47■■□□□ 1.67
CLN3-245ENST00000636172 SASH1O94885 1247 aa25.46■■□□□ 1.67
CLN3-245ENST00000636172 SRGNP10124 158 aa25.46■■□□□ 1.67
CLN3-245ENST00000636172 LDHAL6AQ6ZMR3 332 aa25.46■■□□□ 1.67
CLN3-245ENST00000636172 ERC1Q8IUD2 1116 aa25.46■■□□□ 1.67
CLN3-245ENST00000636172 RHPN1Q8TCX5 695 aa25.46■■□□□ 1.67
CLN3-245ENST00000636172 RBM17Q96I25 401 aaKnown RBP25.46■■□□□ 1.67
CLN3-245ENST00000636172 SMARCA5O60264 1052 aaPredicted RBP25.45■■□□□ 1.66
CLN3-245ENST00000636172 IGHMBP2P38935 993 aaKnown RBP25.45■■□□□ 1.66
CLN3-245ENST00000636172 IL15P40933 162 aaPredicted RBP25.45■■□□□ 1.66
CLN3-245ENST00000636172 ANKRD18AQ8IVF6 992 aa25.45■■□□□ 1.66
CLN3-245ENST00000636172 KIF1BPQ96EK5 621 aa25.45■■□□□ 1.66
CLN3-245ENST00000636172 LRRCC1Q9C099 1032 aa25.45■■□□□ 1.66
CLN3-245ENST00000636172 GRAPQ13588 217 aa25.44■■□□□ 1.66
CLN3-245ENST00000636172 CHD1LQ86WJ1 897 aa25.44■■□□□ 1.66
CLN3-245ENST00000636172 C2CD5Q86YS7 1000 aa25.44■■□□□ 1.66
CLN3-245ENST00000636172 GRAPLQ8TC17 118 aaPredicted RBP25.44■■□□□ 1.66
CLN3-245ENST00000636172 MPHOSPH8Q99549 860 aa25.44■■□□□ 1.66
CLN3-245ENST00000636172 RIPOR2Q9Y4F9 1068 aa25.44■■□□□ 1.66
CLN3-245ENST00000636172 NPR1P16066 1061 aa25.43■■□□□ 1.66
CLN3-245ENST00000636172 RPS8P62241 208 aaKnown RBP25.43■■□□□ 1.66
CLN3-245ENST00000636172 CRAMP1Q96RY5 1269 aa25.43■■□□□ 1.66
CLN3-245ENST00000636172 SPON1Q9HCB6 807 aa25.43■■□□□ 1.66
CLN3-245ENST00000636172 CNNM1Q9NRU3 951 aa25.43■■□□□ 1.66
CLN3-245ENST00000636172 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.43■■□□□ 1.66
CLN3-245ENST00000636172 LNPKQ9C0E8 428 aa25.42■■□□□ 1.66
CLN3-245ENST00000636172 DLEC1Q9Y238 1755 aa25.42■■□□□ 1.66
CLN3-245ENST00000636172 KIAA1551Q9HCM1 1747 aa25.42■■□□□ 1.66
CLN3-245ENST00000636172 H0YIN7 160 aa25.42■■□□□ 1.66
CLN3-245ENST00000636172 SKAP1Q86WV1 359 aa25.42■■□□□ 1.66
CLN3-245ENST00000636172 MASTLQ96GX5 879 aa25.42■■□□□ 1.66
CLN3-245ENST00000636172 BSDC1Q9NW68 430 aaPredicted RBP25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms