RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 PSME1Q06323 249 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 TSR1Q2NL82 804 aaKnown RBP12.82□□□□□ -0.36
CLN3-244ENST00000636147 GOLIM4O00461 696 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 DHX16O60231 1041 aaKnown RBP12.82□□□□□ -0.36
CLN3-244ENST00000636147 FBXO38Q6PIJ6 1188 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 CCDC82Q8N4S0 544 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 CCDC150Q8NCX0 1101 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 ARFGAP3Q9NP61 516 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 STAP2Q9UGK3 403 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 CTNNA3Q9UI47 895 aa12.82□□□□□ -0.36
CLN3-244ENST00000636147 USP27XA6NNY8 438 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 AP5Z1O43299 807 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 RPS6KB1P23443 525 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 KIF4BQ2VIQ3 1234 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 CCDC144BQ3MJ40 725 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 CCDC144CPQ8IYA2 1237 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 CCDC191Q8NCU4 936 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 CCDC12Q8WUD4 166 aaPredicted RBP12.81□□□□□ -0.36
CLN3-244ENST00000636147 ST7Q9NRC1 585 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 DBF4Q9UBU7 674 aaPredicted RBP12.81□□□□□ -0.36
CLN3-244ENST00000636147 PTPN21Q16825 1174 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 AXDND1Q5T1B0 1012 aaPredicted RBP12.81□□□□□ -0.36
CLN3-244ENST00000636147 C11orf57Q6ZUT1 292 aaPredicted RBP12.81□□□□□ -0.36
CLN3-244ENST00000636147 PPFIBP1Q86W92 1011 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 SSH3Q8TE77 659 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 TTC41PQ6P2S7 1318 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 PTPDC1A2A3K4 754 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 EVCP57679 992 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 SAFBQ15424 915 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLN3-244ENST00000636147 MYD88Q99836 296 aa12.81□□□□□ -0.36
CLN3-244ENST00000636147 U3KPZ7 1027 aaPredicted RBP12.81□□□□□ -0.36
CLN3-244ENST00000636147 KARSQ15046 597 aaKnown RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 PLEKHO1Q53GL0 409 aaPredicted RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 JAKMIP3Q5VZ66 844 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 KRBA2Q6ZNG9 492 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 JMYQ8N9B5 988 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 ZSWIM6Q9HCJ5 1215 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 SNRKQ9NRH2 765 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 ORC3Q9UBD5 711 aaPredicted RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 DDX41Q9UJV9 622 aaKnown RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 FAM135BQ49AJ0 1406 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 PIP4K2AP48426 406 aaPredicted RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 TMEM87AQ8NBN3 555 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 PCMTD1Q96MG8 357 aaPredicted RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 TERF2Q15554 542 aa12.8□□□□□ -0.36
CLN3-244ENST00000636147 RRP12Q5JTH9 1297 aaKnown RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 XPO4Q9C0E2 1151 aaKnown RBP12.8□□□□□ -0.36
CLN3-244ENST00000636147 ACBD3Q9H3P7 528 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 HMG20BQ9P0W2 317 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 A0A0D9SFI3 127 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 GOLGA8BA8MQT2 603 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 AKAP17AQ02040 695 aaKnown RBP12.79□□□□□ -0.36
CLN3-244ENST00000636147 KMT5BQ4FZB7 885 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 ATP7AQ04656 1500 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 MYOM2P54296 1465 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 ATP5J2-PTCD1G3V325 749 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 PTCD1O75127 700 aaKnown RBP12.79□□□□□ -0.36
CLN3-244ENST00000636147 ERLIN1O75477 346 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 FAM160A1Q05DH4 1040 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 TDRD7Q8NHU6 1098 aaKnown RBP12.79□□□□□ -0.36
CLN3-244ENST00000636147 RBM33Q96EV2 1170 aaKnown RBP12.79□□□□□ -0.36
CLN3-244ENST00000636147 LAMC1P11047 1609 aa12.79□□□□□ -0.36
CLN3-244ENST00000636147 EIF3JO75822 258 aaKnown RBP12.78□□□□□ -0.36
CLN3-244ENST00000636147 CAGE1Q8TC20 777 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 USP28Q96RU2 1077 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 NLRP2Q9NX02 1062 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 PUF60Q9UHX1 559 aaKnown RBP12.78□□□□□ -0.36
CLN3-244ENST00000636147 SSH2Q76I76 1423 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 PREX2Q70Z35 1606 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 KIAA0232Q92628 1395 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 TXLNBQ8N3L3 684 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 CNNM3Q8NE01 707 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 UNC13BO14795 1591 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 IPO7O95373 1038 aaKnown RBP12.78□□□□□ -0.36
CLN3-244ENST00000636147 LRRFIP1Q32MZ4 808 aaKnown RBP12.78□□□□□ -0.36
CLN3-244ENST00000636147 UBE3BQ7Z3V4 1068 aa12.78□□□□□ -0.36
CLN3-244ENST00000636147 NOC3LQ8WTT2 800 aaKnown RBP12.78□□□□□ -0.36
CLN3-244ENST00000636147 TM6SF1Q9BZW5 370 aa12.77□□□□□ -0.36
CLN3-244ENST00000636147 TSPYL1Q9H0U9 437 aa12.77□□□□□ -0.36
CLN3-244ENST00000636147 MYO5CQ9NQX4 1742 aa12.77□□□□□ -0.36
CLN3-244ENST00000636147 CAPN2P17655 700 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 SYKP43405 635 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 CERS3Q8IU89 383 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 AOX1Q06278 1338 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 H0YHG0 523 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 GRM8O00222 908 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 SEC31AO94979 1220 aaKnown RBP12.77□□□□□ -0.37
CLN3-244ENST00000636147 DHX8Q14562 1220 aaKnown RBP12.77□□□□□ -0.37
CLN3-244ENST00000636147 LZTFL1Q9NQ48 299 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 RSPH14Q9UHP6 348 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLN3-244ENST00000636147 CFAP74Q9C0B2 1584 aa12.77□□□□□ -0.37
CLN3-244ENST00000636147 SPTLC2O15270 562 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 PI4K2BQ8TCG2 481 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 ANKRD7Q92527 254 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 TTC14Q96N46 770 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 SEC62Q99442 399 aaKnown RBP12.76□□□□□ -0.37
CLN3-244ENST00000636147 VPS18Q9P253 973 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 RPAP1Q9BWH6 1393 aaPredicted RBP12.76□□□□□ -0.37
CLN3-244ENST00000636147 GOLGA8FQ08AF8 430 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms