RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 SCO2A0A1W2PP80 73 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 MICAL2O94851 1124 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 CPB1P15086 417 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 C11orf91Q3C1V1 193 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 FOXD4L6Q3SYB3 417 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-211ENST00000635893 PRSS36Q5K4E3 855 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 MSL1Q68DK7 614 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 FOXD4L3Q6VB84 417 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-211ENST00000635893 DHX32Q7L7V1 743 aaKnown RBP7.29□□□□□ -1.24
SCN1A-211ENST00000635893 DTWD1Q8N5C7 304 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 TRPM4Q8TD43 1214 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 LPIN3Q9BQK8 851 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.29□□□□□ -1.24
SCN1A-211ENST00000635893 ZFATQ9P243 1243 aa7.29□□□□□ -1.24
SCN1A-211ENST00000635893 TARSP26639 723 aaKnown RBP7.28□□□□□ -1.24
SCN1A-211ENST00000635893 KRT25Q7Z3Z0 450 aa7.28□□□□□ -1.24
SCN1A-211ENST00000635893 FAM200AQ8TCP9 573 aa7.28□□□□□ -1.24
SCN1A-211ENST00000635893 USP21Q9UK80 565 aa7.28□□□□□ -1.24
SCN1A-211ENST00000635893 ZBTB42B2RXF5 422 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 RARAP10276 462 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 ARID4AP29374 1257 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-211ENST00000635893 GPLD1P80108 840 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 GRIK5Q16478 980 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 PERM1Q5SV97 790 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 ELMSAN1Q6PJG2 1045 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 TTC9Q92623 222 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 IFT43Q96FT9 208 aa7.27□□□□□ -1.25
SCN1A-211ENST00000635893 SASH3O75995 380 aa7.26□□□□□ -1.25
SCN1A-211ENST00000635893 CFAP70Q5T0N1 1121 aa7.26□□□□□ -1.25
SCN1A-211ENST00000635893 FBXO11Q86XK2 927 aa7.26□□□□□ -1.25
SCN1A-211ENST00000635893 TP53INP1Q96A56 240 aa7.26□□□□□ -1.25
SCN1A-211ENST00000635893 OPLAHO14841 1288 aa7.25□□□□□ -1.25
SCN1A-211ENST00000635893 NRLP54845 237 aa7.25□□□□□ -1.25
SCN1A-211ENST00000635893 MLLT1Q03111 559 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-211ENST00000635893 ARTNQ5T4W7 220 aa7.25□□□□□ -1.25
SCN1A-211ENST00000635893 WFDC8Q8IUA0 241 aa7.25□□□□□ -1.25
SCN1A-211ENST00000635893 SSBP4Q9BWG4 385 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-211ENST00000635893 KRTAP4-8Q9BYQ9 185 aa7.25□□□□□ -1.25
SCN1A-211ENST00000635893 RTCBQ9Y3I0 505 aaKnown RBP7.25□□□□□ -1.25
SCN1A-211ENST00000635893 EGFRP00533 1210 aa7.24□□□□□ -1.25
SCN1A-211ENST00000635893 RFX1P22670 979 aa7.24□□□□□ -1.25
SCN1A-211ENST00000635893 ZFP64Q9NPA5 681 aa7.24□□□□□ -1.25
SCN1A-211ENST00000635893 TLR7Q9NYK1 1049 aaKnown RBP7.24□□□□□ -1.25
SCN1A-211ENST00000635893 LRFN2Q9ULH4 789 aa7.24□□□□□ -1.25
SCN1A-211ENST00000635893 XYLBO75191 536 aa7.23□□□□□ -1.25
SCN1A-211ENST00000635893 PLAURQ03405 335 aa7.23□□□□□ -1.25
SCN1A-211ENST00000635893 IGF2-ASQ6U949 168 aa7.23□□□□□ -1.25
SCN1A-211ENST00000635893 TREML1Q86YW5 311 aa7.23□□□□□ -1.25
SCN1A-211ENST00000635893 WFDC12Q8WWY7 111 aa7.23□□□□□ -1.25
SCN1A-211ENST00000635893 SMG9Q9H0W8 520 aaKnown RBP7.23□□□□□ -1.25
SCN1A-211ENST00000635893 EIF2AK2P19525 551 aaKnown RBP7.22□□□□□ -1.25
SCN1A-211ENST00000635893 RGL4Q8IZJ4 473 aa7.22□□□□□ -1.25
SCN1A-211ENST00000635893 CMTR1Q8N1G2 835 aaKnown RBP7.22□□□□□ -1.25
SCN1A-211ENST00000635893 PSMG3-AS1Q96PY0 264 aa7.22□□□□□ -1.25
SCN1A-211ENST00000635893 NOVA2Q9UNW9 492 aaKnown RBP7.22□□□□□ -1.25
SCN1A-211ENST00000635893 USP20Q9Y2K6 914 aa7.22□□□□□ -1.25
SCN1A-211ENST00000635893 IREB2P48200 963 aaKnown RBP7.21□□□□□ -1.26
SCN1A-211ENST00000635893 FKBP5Q13451 457 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-211ENST00000635893 SWI5Q1ZZU3 235 aa7.21□□□□□ -1.26
SCN1A-211ENST00000635893 CDCA8Q53HL2 280 aa7.21□□□□□ -1.26
SCN1A-211ENST00000635893 COX20Q5RI15 118 aa7.21□□□□□ -1.26
SCN1A-211ENST00000635893 HFE2Q6ZVN8 426 aa7.21□□□□□ -1.26
SCN1A-211ENST00000635893 ZNF777Q9ULD5 760 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-211ENST00000635893 PSAPP07602 524 aa7.2□□□□□ -1.26
SCN1A-211ENST00000635893 NOS3P29474 1203 aa7.2□□□□□ -1.26
SCN1A-211ENST00000635893 ACIN1Q9UKV3 1341 aaKnown RBP7.2□□□□□ -1.26
SCN1A-211ENST00000635893 LOC102724428A0A0B4J2F2 783 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 MMP20O60882 483 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 DEAF1O75398 565 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-211ENST00000635893 SOX18P35713 384 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 SIK1P57059 783 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 LRP8Q14114 963 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 PLD4Q96BZ4 506 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 PRIMPOLQ96LW4 560 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 KCNMB2Q9Y691 235 aa7.19□□□□□ -1.26
SCN1A-211ENST00000635893 J3QW42 95 aa7.18□□□□□ -1.26
SCN1A-211ENST00000635893 DLL1O00548 723 aa7.18□□□□□ -1.26
SCN1A-211ENST00000635893 GHRHP01286 108 aa7.18□□□□□ -1.26
SCN1A-211ENST00000635893 HOXD8P13378 290 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-211ENST00000635893 ELOAQ14241 798 aaKnown RBP7.18□□□□□ -1.26
SCN1A-211ENST00000635893 NBPF11Q86T75 865 aa7.18□□□□□ -1.26
SCN1A-211ENST00000635893 RBSNQ9H1K0 784 aa7.18□□□□□ -1.26
SCN1A-211ENST00000635893 PRMT3O60678 531 aa7.17□□□□□ -1.26
SCN1A-211ENST00000635893 BRD2P25440 801 aaKnown RBP7.17□□□□□ -1.26
SCN1A-211ENST00000635893 SRA1Q9HD15 236 aaKnown RBP7.17□□□□□ -1.26
SCN1A-211ENST00000635893 OCLNQ16625 522 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 GDF6Q6KF10 455 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-211ENST00000635893 C16orf46Q6P387 395 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 NLRP13Q86W25 1043 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 ETFBKMTQ8IXQ9 262 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 TMEM130Q8N3G9 435 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 IL22RA1Q8N6P7 574 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 DCAF11Q8TEB1 546 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 COL26A1Q96A83 441 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 MEGF10Q96KG7 1140 aa7.16□□□□□ -1.26
SCN1A-211ENST00000635893 NSUN5Q96P11 429 aaKnown RBP7.16□□□□□ -1.26
SCN1A-211ENST00000635893 MRPL18Q9H0U6 180 aaKnown RBP7.16□□□□□ -1.26
SCN1A-211ENST00000635893 HYAL3O43820 417 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-211ENST00000635893 FAM69CQ0P6D2 419 aa7.15□□□□□ -1.26
SCN1A-211ENST00000635893 MAP4K3Q8IVH8 894 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms